Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060483.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22275.1 68414.m02784 expressed protein                             28   5.0  
At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family prote...    27   8.8  

>At1g22275.1 68414.m02784 expressed protein
          Length = 856

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 102 NMVNMXEQQSSTETAAVCKNEKLLNKLEXSSYNKSNMDQL----IAIVNXLEKKNLT 260
           ++V++ E+    +T     +++L  KL  S      +D+L    IA +  L+KKNLT
Sbjct: 250 HLVSIQEKLEKEKTNVQLSSDELFEKLVRSEQEVKKLDELVHYLIAELTELDKKNLT 306


>At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 324

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 390 LVARPCGIW*KXRPNWQILCSFLITLKRWVKKW 488
           LVA  C I  K RP W +   FLI + R++  W
Sbjct: 161 LVAPMCKISDKVRPKWPV-DQFLIMISRFLPTW 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,935,994
Number of Sequences: 28952
Number of extensions: 198448
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)