Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060481.seq
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...   155   3e-40
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...   155   3e-40
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...   131   4e-33
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...   129   2e-32
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.5  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.5  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   5.7  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score =  155 bits (376), Expect = 3e-40
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score =  155 bits (376), Expect = 3e-40
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  155 bits (376), Expect = 3e-40
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  155 bits (376), Expect = 3e-40
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228



 Score =  155 bits (376), Expect = 3e-40
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score =  155 bits (376), Expect = 3e-40
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380



 Score =  155 bits (376), Expect = 3e-40
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532



 Score =  155 bits (376), Expect = 3e-40
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608



 Score =  155 bits (376), Expect = 3e-40
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684



 Score =  153 bits (370), Expect = 1e-39
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score =  131 bits (317), Expect = 4e-33
 Identities = 63/64 (98%), Positives = 64/64 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IQKE 210
           IQKE
Sbjct: 61  IQKE 64


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score =  129 bits (311), Expect = 2e-32
 Identities = 62/64 (96%), Positives = 63/64 (98%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYN
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108

Query: 199 IQKE 210
           IQKE
Sbjct: 109 IQKE 112



 Score =  100 bits (240), Expect = 8e-24
 Identities = 47/48 (97%), Positives = 48/48 (100%)
 Frame = +1

Query: 103 KIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 246
           KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 1   KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 48


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 244 HHEASTPGGGWIPSGYCSPR 185
           HH    P GG  P G   PR
Sbjct: 63  HHYGGPPSGGQPPQGMPYPR 82


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 391 CSPVHSRRRRWIXPFSSTL*NLRTASLTFFFLCLIF 284
           C P  S  R +   FS+T   L  A +TF  + L F
Sbjct: 253 CRPTFSAARFYGIDFSNTFLGLVGAVVTFLIVLLQF 288


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 216 GGFLLDIVVREGTSIFQLLSS 154
           GGFLL  VV+ G ++   LSS
Sbjct: 108 GGFLLCKVVKYGQTLGPYLSS 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,330
Number of Sequences: 336
Number of extensions: 2354
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)