Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060481.seq
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 159 2e-39
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 2e-38
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 155 2e-38
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 155 2e-38
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 129 1e-30
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 86 2e-17
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 59 3e-09
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 49 3e-06
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 40 0.001
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 37 0.010
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 36 0.032
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.042
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 33 0.17
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 32 0.29
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 31 0.68
SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32) 30 1.6
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 29 2.1
SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05) 28 4.8
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 4.8
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 28 4.8
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.3
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.3
SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37) 27 8.4
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 8.4
SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 27 8.4
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 8.4
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 27 8.4
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 8.4
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 27 8.4
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 27 8.4
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.4
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.4
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 27 8.4
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 8.4
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 159 bits (385), Expect = 2e-39
Identities = 77/78 (98%), Positives = 78/78 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IQKESTLHLVLRLRGGAK 252
IQKESTLHLVLRLRGGAK
Sbjct: 61 IQKESTLHLVLRLRGGAK 78
Score = 97.9 bits (233), Expect = 5e-21
Identities = 46/72 (63%), Positives = 50/72 (69%)
Frame = +3
Query: 252 ERKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 431
+RKKKNY+TP LAVL++YKVDENGKI RLRREC E CGAGVFMA DR
Sbjct: 79 KRKKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFDR 138
Query: 432 HYCGKCHSTMVF 467
YCGKC T VF
Sbjct: 139 QYCGKCCLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 155 bits (376), Expect = 2e-38
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 199 IQKESTLHLVLRLRGG 246
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 82.2 bits (194), Expect = 3e-16
Identities = 41/71 (57%), Positives = 54/71 (76%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQI VK KT TL+VE SDT+E+VK KIQ++EGIPP QRL++ ++L D R+L+DYN
Sbjct: 77 MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135
Query: 199 IQKESTLHLVL 231
I++ S LHL L
Sbjct: 136 IKQGSILHLFL 146
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 129 bits (312), Expect = 1e-30
Identities = 62/63 (98%), Positives = 63/63 (100%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 199 IQK 207
IQK
Sbjct: 139 IQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 86.2 bits (204), Expect = 2e-17
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +1
Query: 124 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 246
IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 42
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 25 IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 201
I V TLTG+ I + + P TI VK I+ K G P +QQRL+F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 202 QKESTLHLVLRLRGG 246
+TLHL++RL GG
Sbjct: 133 FAGATLHLIVRLLGG 147
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +1
Query: 1 SVRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ---DKEGIPPNQQRLIFAGKQLE 171
+++ V M I KTL +T +E+ +T+ +K KI+ K+ P +LI+AGK L
Sbjct: 61 NIKSVNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILN 120
Query: 172 DGRTLSDYNIQKES 213
D L +YNI ++S
Sbjct: 121 DDNPLKEYNIDEKS 134
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDY 195
M++ V G TL+V +EN +A ++ + G+P ++ L G QL D +TL+ Y
Sbjct: 1 MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAY 60
Query: 196 NIQKESTLHLVLR-LRGGAKN 255
++++ + +V R R A+N
Sbjct: 61 SVKENDVILMVRRQARHAARN 81
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 120
M ++++TLTG L V P +TI +VKAKIQ E
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 22 QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
Q+F T TL +D + +K++I+ K GIP + QRL F K+L D TL+ N
Sbjct: 7 QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66
Query: 199 IQK 207
+++
Sbjct: 67 LKQ 69
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 35.5 bits (78), Expect = 0.032
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +1
Query: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
MQ+ VKTL +T T V +EGIP +QRLIF GK L+D + L +++
Sbjct: 1 MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 10 RVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLS 189
R+++ + +G L++ + TIE ++ ++ DK G PP QR I K + +L
Sbjct: 33 RLRVVVEDSETSGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLL 92
Query: 190 DYNIQKES-TLHLVL 231
+++ T +L L
Sbjct: 93 QCKVRETGFTAYLYL 107
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +1
Query: 28 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 207
FV G+ ITL P + ++ + G P ++ K LED T++D + Q
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 208 ESTLHLVLR 234
+TL + L+
Sbjct: 229 GATLQIELQ 237
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 121 GIPPNQQRLIFAGKQLEDGRTLSDYN 198
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 82 TIENVKAKIQDKEGIPPNQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 225
T+ ++K + +K G+ + RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +1
Query: 25 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQ 204
+ ++T G T+ +E+ ++E++KA+ + + GIP RL LED + +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHL 244
Query: 205 KEST 216
+++T
Sbjct: 245 QKAT 248
>SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 208 ESTLHLVLRLRGG 246
ESTLHLVLRLRGG
Sbjct: 14 ESTLHLVLRLRGG 26
>SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32)
Length = 78
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 208 ESTLHLVLRLRGG 246
ESTLHLVLRLRGG
Sbjct: 14 ESTLHLVLRLRGG 26
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +1
Query: 31 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGR---TLSDYNI 201
V + G+T + P +I +K KI + +QRL++ +L++ + LS++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 202 QKESTLHLVLRL 237
+T+ L++ L
Sbjct: 120 PPYATISLIVVL 131
>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
Length = 510
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 138 TEVDLRWKAAGRWTYPLGLQYPEGIHPPPG 227
+ V ++ + G++T+ GLQ P+G PPG
Sbjct: 223 SNVTIKLRFIGKFTFKQGLQGPKGERGPPG 252
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 345 ENGKIHRLRRECTGEQC 395
+ G+IH L++EC G QC
Sbjct: 106 DGGEIHNLQQECIGSQC 122
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 257 QEEELLHTQEDQAQEEEGQTSRPQVLQGRRE 349
Q++ELL Q+ Q QE++ Q ++ Q + E
Sbjct: 419 QQQELLQQQQQQQQEQQSQRQASEIAQQQAE 449
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 440 AVVTVLHHRHEHSGA 396
A++TV+HHRH H A
Sbjct: 525 AIITVIHHRHHHHPA 539
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 434
YK D GK+ L+R C ++C ++ V D +
Sbjct: 364 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 397
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 455
YK D GK+ L+R C ++C + + C +C S
Sbjct: 515 YKCDNCGKVGHLKRVCQSKECKKXXXXQGGKPKTACHRCGS 555
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 568 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 599
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 434
YK D GK+ L+R C ++C ++ V D +
Sbjct: 207 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 240
>SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)
Length = 493
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 63 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 94
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 188 RTTISRRNPPSTWC*GFVVALRTQEEELLHTQEDQAQEEE 307
RTT +R PS V A+R EE L +ED +EE
Sbjct: 66 RTTHYQRTYPSWHAHREVPAIRKSEESSLEDEEDDEDDEE 105
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +1
Query: 40 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 171
L G +IT+ +E D +EN++ +K+ +PP ++L+F + L+
Sbjct: 102 LGGNSITV-IEGLDKLENLRELHMEKQHLPPG-EKLLFDPRTLQ 143
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 372 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 403
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 114 QRGNPSQSTEVDLRWKAAGRWTYPLGLQYPEGIHPPPGVEAS 239
QRG S+ T + W+ +G + L IHPP V S
Sbjct: 299 QRGVSSRKTMISKAWQVSGVYHITLDANVTPVIHPPRRVAIS 340
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 898 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 929
>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 248 LRTQEEELLHTQEDQAQEEEGQTSRPQVLQGRRERXD 358
LR Q EE +E + +EEE +T R + RRE +
Sbjct: 471 LRRQREEARRLEEQRRREEEERTRREKEEAQRREEEE 507
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 245 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 276
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 202 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 233
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 66 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 97
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 268 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 299
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 333 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 428
YK D GK+ L+R C ++C ++ V D
Sbjct: 428 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 459
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,740,668
Number of Sequences: 59808
Number of extensions: 344372
Number of successful extensions: 1129
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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