Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060481.seq
         (578 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    155   1e-39
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    26   1.0  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   5.4  
X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.     23   7.2  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   7.2  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   7.2  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   9.5  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   9.5  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  155 bits (376), Expect = 1e-39
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  155 bits (376), Expect = 1e-39
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  155 bits (376), Expect = 1e-39
 Identities = 75/76 (98%), Positives = 76/76 (100%)
 Frame = +1

Query: 19  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 198
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 199 IQKESTLHLVLRLRGG 246
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 9   ESEDANFRKDPHGQDHH 59
           ESE  N RK PH QD H
Sbjct: 50  ESEGGNLRKYPHFQDIH 66


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 115 KEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 237
           K   P  Q R IF G+ +++   +    +Q++   HL++ L
Sbjct: 588 KREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLLMNL 628


>X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.
          Length = 696

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 269 LLHTQEDQAQEEEGQTSRPQVLQGRRERXD 358
           LL TQ+ Q Q+++ Q  + Q  QG+  + D
Sbjct: 646 LLATQQLQQQQQQQQQQQQQQQQGQTGQAD 675


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 251  RTQEEELLHTQEDQAQEEEGQTSRP 325
            RT+E   LH + ++A  +  + S+P
Sbjct: 1107 RTEERRQLHNEANRAYRQRNRRSQP 1131


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -2

Query: 244 HHEASTPGGGWIPSGYCSPRGYVHLPAAFQRRSTSV 137
           HH A  P  G  P     P+   H P A  R S  +
Sbjct: 824 HHAAQQPPPGSHPGAQTQPQLSQHPPGASGRSSAVI 859


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 473 VFEDHRAVTLPAVVTVLHHRHE 408
           +F DHR    PA V  L   HE
Sbjct: 903 IFIDHRGHKAPAAVVGLQFLHE 924


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 183 PLGLQYPEGIHPPPGV 230
           P G+  P G H PPG+
Sbjct: 5   PPGVNRPPGSHRPPGL 20


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,815
Number of Sequences: 2352
Number of extensions: 11407
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)