Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060479.seq
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713...    29   4.5  
08_02_0839 + 21693348-21694853                                         29   4.5  
06_01_0476 - 3388176-3389267                                           28   6.0  
06_01_0611 + 4420873-4422207                                           28   7.9  

>10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,
            7131375-7131459,7131609-7131771,7132861-7132937,
            7133016-7133160,7133236-7133537,7133615-7133720,
            7134781-7134935,7135556-7135712,7135799-7135891,
            7136232-7136359,7136439-7136696,7136855-7137145,
            7137235-7137318,7138335-7138468,7138557-7138784,
            7139778-7139958,7140021-7140108,7140268-7140434,
            7140750-7141012,7141117-7141120
          Length = 1216

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 535  YSLQPTNVSDTNHEGLITRSRSTVHSLWNKALDTLVPRRRPPNW 666
            Y +    ++ T H   +  S    +SLWN     L+P+ R P W
Sbjct: 1092 YGMVAVGLTPTQHMASVVSS--AFYSLWNLLSGFLIPQSRIPGW 1133


>08_02_0839 + 21693348-21694853
          Length = 501

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 334 GWGRKECVDCAICIXMFYGKI*SDDR-GFLQKRNRSGHSPCVLEILDTAGTEQLLRCEIL 510
           G GRK+  DCA+C+  F      DDR   L K + + H  C+   L +  T  L R  +L
Sbjct: 144 GAGRKDPFDCAVCLCEFA----DDDRLRLLPKCSHAFHVDCIDTWLLSHSTCPLCRRSLL 199


>06_01_0476 - 3388176-3389267
          Length = 363

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 319 GRVGFGWGRKECVDCAICIXMFYG 390
           G  G G G KE  DCA+C+  F G
Sbjct: 117 GGGGAGGGAKEPFDCAVCLCEFAG 140


>06_01_0611 + 4420873-4422207
          Length = 444

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +1

Query: 325 VGFGWGRKECVDCAICIXMFYGKI*SDDRGFLQKRNRSGHSPCVLEILDTAGTEQLLRCE 504
           VG G  + +  DCA+C+  F G    D    L     + H PC+   L +  T  + R  
Sbjct: 111 VGAGLRKDDPFDCAVCLCEFAG---DDKLRLLPTCGHAFHVPCIDAWLLSHSTCPICRGS 167

Query: 505 ILLKXA 522
           +L   A
Sbjct: 168 VLAAAA 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,559,093
Number of Sequences: 37544
Number of extensions: 357856
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)