Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060479.seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47462| Best HMM Match : Ras (HMM E-Value=0)                         56   3e-08
SB_1071| Best HMM Match : Ras (HMM E-Value=0)                          45   7e-05
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          40   0.002
SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35)                     37   0.013
SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07)                   36   0.040
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)                   35   0.053
SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)       34   0.093
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.49 
SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21)                   31   0.65 
SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19)                   31   0.86 
SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08)                   30   2.0  
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)                  30   2.0  
SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13)                  30   2.0  
SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)                       29   3.5  
SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)                   28   6.1  

>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
          Length = 385

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/46 (58%), Positives = 31/46 (67%)
 Frame = +2

Query: 302 MREFXXXXXXXXXXXXXALTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
           M+E+             ALTVQFV+  F+EKYDPTIEDFYRKEIEV
Sbjct: 1   MKEYKVVVLGSGGVGKSALTVQFVTGQFVEKYDPTIEDFYRKEIEV 46



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +1

Query: 325 VGFGWGRKECVDCAICIXMFYGKI*SDDRGFLQKRNRSGHSPCVLEILDTAGTEQLLRC- 501
           +G G   K  +        F  K       F +K     ++P +LEILDTAGTEQ     
Sbjct: 9   LGSGGVGKSALTVQFVTGQFVEKYDPTIEDFYRKEIEVDNNPSILEILDTAGTEQFASMR 68

Query: 502 EILLKXAR--LVXYSL 543
           ++ +K  +  L+ YSL
Sbjct: 69  DLYIKNGQGFLLVYSL 84


>SB_1071| Best HMM Match : Ras (HMM E-Value=0)
          Length = 228

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 21/40 (52%), Positives = 25/40 (62%)
 Frame = +2

Query: 302 MREFXXXXXXXXXXXXXALTVQFVSXCFMEKYDPTIEDFY 421
           M+E+             ALTVQFV+  F+EKYDPTIEDFY
Sbjct: 1   MKEYKVVVLGSGGVGKSALTVQFVTGQFVEKYDPTIEDFY 40


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +2

Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKE 430
           ALT+QF+   F+  YDPTIED YRK+
Sbjct: 26  ALTIQFIQSHFVSDYDPTIEDSYRKQ 51


>SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35)
          Length = 263

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +2

Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
           AL V+F+   F+ +YDPTIED YRK I +
Sbjct: 20  ALLVRFLCHRFLGEYDPTIEDKYRKSINI 48


>SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07)
          Length = 92

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +2

Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEIE 436
           +LT+QFV   F++ YDPTIE+ + K I+
Sbjct: 21  SLTIQFVEGQFVDSYDPTIENTFTKNIK 48


>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
          Length = 965

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +2

Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEIEVA 442
           ALTV+F++  F+ +YD T+E  YR++ EVA
Sbjct: 876 ALTVRFLTKRFIGEYDDTLESTYRQDAEVA 905


>SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)
          Length = 399

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 17/24 (70%), Positives = 17/24 (70%)
 Frame = -2

Query: 417 KSSIVGSYFSIKHXDTNCTVNALF 346
           KSSIVGSYFS     TNC VNA F
Sbjct: 1   KSSIVGSYFSTNCPVTNCKVNADF 24


>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1288

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 259 VMKRIHTVRYKMSLLCWFMTHSDAITELHLLKLIDKHRRHFSSM*IKITPTA 104
           +++ +  +R K S +  + THSD ITE+ + K      +  S + IK+ P A
Sbjct: 181 ILEELVVLRKKRSDILGYATHSDYITEMRMSKSAANVSKFLSDLAIKLHPLA 232


>SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21)
          Length = 242

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 296 TIMREFXXXXXXXXXXXXXALTVQFVSXCFMEKYDPTIEDFYRKEI 433
           T +R F             +L ++F+   F + Y PTIEDF+ K +
Sbjct: 24  TSLRRFTIVFFGASSVGKTSLILRFLGYAFNDDYSPTIEDFFIKHV 69


>SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19)
          Length = 351

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEIEVA 442
           +L  +F+S  F E+Y PT+ D Y K + ++
Sbjct: 122 SLVKRFISGTFSEQYTPTVGDLYEKSVTLS 151


>SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08)
          Length = 155

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 356 LTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
           LTV+F++  F+ +YDP +E  YR  + V
Sbjct: 2   LTVRFITRRFIGEYDPCLEASYRHHLTV 29


>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
          Length = 1160

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 592  SRSTVHSLWNKALDTLVPRRRPPNWVP 672
            SR  V ++W+ A D L P RRPP  +P
Sbjct: 1035 SRDKVLNIWDMA-DMLTPNRRPPRTIP 1060


>SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13)
          Length = 232

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 592 SRSTVHSLWNKALDTLVPRRRPPNWVP 672
           SR  V ++W+ A D L P RRPP  +P
Sbjct: 3   SRDKVLNIWDMA-DMLTPNRRPPRTIP 28


>SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)
          Length = 513

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 385 KTS*YKLHSQRTLSDPTRTQHDHFKFAHYCAP*IT 281
           KTS + +   RT  DPT++QH+ F F  + +P +T
Sbjct: 364 KTSLFGVQPSRT-RDPTKSQHNGFAFVLHVSPPLT 397


>SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)
          Length = 460

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
           ALTV+F++  F+ +YD T+E  +R  +++
Sbjct: 31  ALTVRFLTRRFIGEYDQTLESTHRHILQI 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,773,503
Number of Sequences: 59808
Number of extensions: 425581
Number of successful extensions: 881
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)