Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060479.seq
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical p... 60 1e-09
Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical pr... 53 2e-07
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 43 2e-04
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding pro... 39 0.004
U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog ... 39 0.004
CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical ... 39 0.004
CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical ... 39 0.004
Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical p... 36 0.027
Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical pr... 34 0.082
U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding pro... 34 0.082
AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-rela... 34 0.11
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical pr... 28 5.4
>Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical
protein C25D7.7 protein.
Length = 181
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/46 (65%), Positives = 31/46 (67%)
Frame = +2
Query: 302 MREFXXXXXXXXXXXXXALTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
MREF ALTVQFVS F+EKYDPTIEDFYRKEIEV
Sbjct: 1 MREFKVVVLGSGGVGKSALTVQFVSSTFIEKYDPTIEDFYRKEIEV 46
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +1
Query: 415 FLQKRNRSGHSPCVLEILDTAGTEQ 489
F +K P VLEILDTAGTEQ
Sbjct: 39 FYRKEIEVDGQPSVLEILDTAGTEQ 63
>Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical
protein C27B7.8 protein.
Length = 188
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/46 (54%), Positives = 29/46 (63%)
Frame = +2
Query: 302 MREFXXXXXXXXXXXXXALTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
MRE+ ALTVQFV F+EKYDPTIED YRK++EV
Sbjct: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV 46
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 451 CVLEILDTAGTEQ 489
C+LEILDTAGTEQ
Sbjct: 51 CMLEILDTAGTEQ 63
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 299 IMREFXXXXXXXXXXXXXALTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
+M E+ ALT+Q + F+E+YDPTIED YRK++ +
Sbjct: 3 VMTEYKLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVI 49
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +2
Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
ALT+Q + F+E+YDPTIED YRK++ +
Sbjct: 18 ALTIQLIQNHFVEEYDPTIEDSYRKQVVI 46
>U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding
protein protein.
Length = 212
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKE 430
ALT+QF+ F++ YDPTIED Y K+
Sbjct: 32 ALTIQFIQRYFVQDYDPTIEDSYTKQ 57
>U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog
protein.
Length = 212
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKE 430
ALT+QF+ F++ YDPTIED Y K+
Sbjct: 32 ALTIQFIQRYFVQDYDPTIEDSYTKQ 57
>CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical
protein C44C11.1b protein.
Length = 168
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKE 430
ALT+QF+ F++ YDPTIED Y K+
Sbjct: 32 ALTIQFIQRYFVQDYDPTIEDSYTKQ 57
>CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical
protein C44C11.1a protein.
Length = 212
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKE 430
ALT+QF+ F++ YDPTIED Y K+
Sbjct: 32 ALTIQFIQRYFVQDYDPTIEDSYTKQ 57
>Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical
protein C08F8.7 protein.
Length = 205
Score = 35.9 bits (79), Expect = 0.027
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 302 MREFXXXXXXXXXXXXXALTVQFVSXCFMEKYDPTIEDFYRK 427
M+E+ ALT+Q+V F+ YD TIED YRK
Sbjct: 1 MKEYKIVVLGNGGVGKSALTLQYVQGIFVHTYDATIEDSYRK 42
>Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical
protein F17C8.4 protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
+LT+QF F++ YDPTIED Y + E+
Sbjct: 32 SLTIQFFQKQFVDYYDPTIEDQYIQHCEI 60
>U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding
protein protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEIEV 439
+LT+QF F++ YDPTIED Y + E+
Sbjct: 32 SLTIQFFQKQFVDYYDPTIEDQYIQHCEI 60
>AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-related
gtpase) homologprotein 1 protein.
Length = 213
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +2
Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEI 433
ALT+QF+ F+E+Y+PT D YRK++
Sbjct: 32 ALTLQFMYDEFVEEYEPTKADSYRKKV 58
>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical protein
F59F3.5 protein.
Length = 1199
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -1
Query: 262 NVMKR---IHTVRYKMSLLCWFMTHSDAITELHLLKLIDKHRRHFSS 131
N+ KR H YK+ +CW + D T +KL H ++F+S
Sbjct: 1121 NINKRPSNCHKDVYKIMKMCWQASPDDRPTFAECIKLFKNHIQYFAS 1167
>Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical
protein F54C8.5 protein.
Length = 207
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 353 ALTVQFVSXCFMEKYDPTIEDFYRKEI 433
AL ++F F E+Y+ TIED + K I
Sbjct: 28 ALVLRFTQNIFPERYESTIEDQHSKHI 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,982,475
Number of Sequences: 27780
Number of extensions: 321368
Number of successful extensions: 773
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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