Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060479.seq
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    29   2.2  
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    29   2.8  
At4g15730.1 68417.m02394 expressed protein                             28   6.6  
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    28   6.6  
At4g10400.1 68417.m01707 F-box family protein contains F-box dom...    27   8.7  

>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 673 EAPNWE-DASEALVCQAPYSTVNGPSTLTE*SILHGLCLKRWWVVMNI 533
           E P+ + +     +CQ  Y   +  +TL      H  CLK+W V+ N+
Sbjct: 417 EGPSTDLETDSCTICQENYKNEDKIATLDCMHKYHAECLKKWLVIKNV 464


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
            MAP3K epsilon protein kinase [Arabidopsis thaliana]
            gi|3549652|emb|CAA12272
          Length = 1368

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -1

Query: 310  FAHYCAP*ITIASLPHNVMKRIHTVRYKMSLLCWFMTHSDAITELHLLKLIDKHRRH 140
            F H   P + I +  + + K +  V     LL   + H DAI  L+LLKLI     H
Sbjct: 1260 FVHILEPFLKIITKSYRINKTL-AVNGLTPLLISRLDHQDAIARLNLLKLIKAVYEH 1315


>At4g15730.1 68417.m02394 expressed protein
          Length = 1059

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 538  SLQPTNVSDTNHEGLITRSRSTVHSLWNKALDTLVPRRRPPNWVPL 675
            S   ++V   NH+G+I +S  T   L + A + L   R   N+VPL
Sbjct: 939  SSSASDVDSFNHQGVIKKSAKTRRGLSHVAGNLLPVARSQLNFVPL 984


>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 214 CWFMTHSDAITELHLLKLIDKHRRHFS 134
           C F+TH+D +   H++K I +HR   S
Sbjct: 230 CNFVTHNDCMNSPHIIK-ISRHRHRIS 255


>At4g10400.1 68417.m01707 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 409

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 235 RYKMSLLCWFMTHSDAITELHLLKLIDKH 149
           +Y  +LL WF+ +S  + EL L+   D H
Sbjct: 295 KYSSNLLVWFLKNSPNLRELMLVSETDDH 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,050
Number of Sequences: 28952
Number of extensions: 291651
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)