Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060478.seq
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 29 0.63
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 0.83
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 28 1.1
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.4
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 26 4.4
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 7.7
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 7.7
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 25 7.7
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 7.7
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 29.1 bits (62), Expect = 0.63
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
K+E P E + +P SPV S K E +E K +DEAPK
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPK 527
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 144 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
+E + KES K++PA+K + + ENGT+E K
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEEGKK 88
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 541 YYTILIASTMKGXLFVLIKLGYIYNHXIIYCKSA 642
+ T+LI + KG + L+K+G + +I C A
Sbjct: 5 FSTVLITGSSKGLGYALVKVGLAQGYNVIACSRA 38
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 132 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 248
++ PE+ + + PVKK P+KK + A++N E DE
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADE 95
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 99 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMV 278
A A A + + +V+ + + +PK++PV S A + A N + T E K+
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKEKKSSGKQKIA 266
Query: 279 MLKK 290
KK
Sbjct: 267 SKKK 270
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 251 PKDSPAENGDAEESNDASENGDATEKKETGVKR 349
PK +P N A ++++ + + EKK +G ++
Sbjct: 232 PKKTPVSNSTASQASENASDKKTKEKKSSGKQK 264
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 7.7
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 144 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMV---MLKKATMHLR-- 308
EE + +S V +KKV+ +++GKE+ E K + K LKK + L+
Sbjct: 108 EEDLVDKSLDSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLD 167
Query: 309 TVMPQKRKRLV 341
QKRKR V
Sbjct: 168 DSHTQKRKRKV 178
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 260 SPAENGDAEESNDASENGDAT 322
SP NGD E +ENG+ T
Sbjct: 9 SPTTNGDKNEDGYPAENGEGT 29
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 299 HRCFLQHHHFQQANLW 252
HR F + HHF++ N W
Sbjct: 273 HRGFFECHHFKKTNEW 288
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATMH 302
D+ A +E + E E + + E E ++ T+E PK L+ + K +T
Sbjct: 46 DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105
Query: 303 LRTVMP 320
V+P
Sbjct: 106 FYDVVP 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,386
Number of Sequences: 5004
Number of extensions: 38443
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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