Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060478.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275...    34   0.091
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116...    33   0.21 
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809...    33   0.28 
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221...    32   0.37 
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426...    32   0.49 
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    31   1.1  
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    30   1.5  
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560...    30   2.0  
09_06_0240 + 21797458-21799369,21799636-21799784                       29   4.5  
02_02_0489 + 10869482-10871218                                         29   4.5  
06_02_0083 - 11539955-11540257,11540594-11540742,11540938-115410...    28   6.0  
01_01_1219 + 9858375-9858483,9859184-9859506                           28   6.0  
10_07_0020 - 11944054-11944653,11944734-11944847,11944917-119449...    28   7.9  
10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290...    28   7.9  
05_07_0293 + 29031318-29031812,29032096-29032158,29032365-290324...    28   7.9  
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444...    28   7.9  

>05_01_0351 +
           2750253-2751042,2751951-2751958,2752122-2752149,
           2754692-2754775,2755780-2757548
          Length = 892

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 111 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKV-EAAESNGKENGTDEAPKIRLLKMVMLK 287
           D   D K   P   T+ + ++ P KK PA +  +   ++ K  G   AP  R  ++   K
Sbjct: 389 DPPEDNKASKPNAATAADGQKPPAKKKPAARPGDTTAASAKVAGVKRAPSDRQEELATKK 448

Query: 288 KATMH-LRTVMPQKR 329
           KA ++ ++T+   K+
Sbjct: 449 KAKLNKIKTLATDKK 463


>05_06_0106 -
           25611239-25611295,25611388-25611477,25611582-25611669,
           25611757-25611836,25611968-25612120,25612403-25612546,
           25612633-25612884,25612985-25613116,25613207-25613287,
           25613368-25613488,25613930-25614025,25614195-25614298,
           25614481-25614567,25614690-25614803,25614871-25614930,
           25615007-25615102,25615316-25615366,25615457-25615562,
           25615642-25615713,25616117-25616172,25616446-25616508,
           25616636-25616764
          Length = 743

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = +3

Query: 126 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAES 221
           K E  PE+ T T PKE P KK+  K+ E AES
Sbjct: 476 KNETRPEK-TETAPKEKPSKKNRKKEKEVAES 506


>04_04_1188 +
           31579833-31579914,31580001-31580176,31580822-31580923,
           31581015-31581245,31581821-31581922,31582092-31582184,
           31582275-31582379,31582455-31582514,31582621-31582698,
           31582778-31582924,31583011-31583109,31583178-31583267,
           31583360-31583451,31583529-31583646,31583783-31583871,
           31583998-31584088,31584203-31584294,31584442-31584749,
           31584866-31584897
          Length = 728

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = +3

Query: 108 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLK 287
           A +A  +K V  + V S E  +   K+ P KKVE++ S    + ++E  K +  K V  K
Sbjct: 39  AVSAKKQKTVREKVVPSKEEAKKVKKQPPPKKVESSSSEEDSSESEEEVKAQPKKTVQPK 98

Query: 288 KA 293
           KA
Sbjct: 99  KA 100


>03_05_0211 -
           22020515-22020687,22020801-22020831,22022060-22022169,
           22022715-22023102,22023344-22023397,22023739-22023849,
           22023956-22024015,22024618-22024694,22026155-22026188,
           22026267-22027235
          Length = 668

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +3

Query: 126 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATMHL 305
           KK V P+  +S+E KE   KKS  KKV   +    E G     ++R     +LKK   + 
Sbjct: 543 KKSVTPKRPSSSE-KEIKDKKSSGKKVTKGKGESAEVGLPSKDELRKTITEILKKVDFNT 601

Query: 306 RT 311
            T
Sbjct: 602 AT 603


>08_02_1554 +
           27841801-27842007,27842282-27842455,27842554-27842653,
           27843273-27843725,27843936-27844469,27844500-27844580,
           27844690-27844781,27844890-27844963,27845071-27845293,
           27845429-27845522,27845607-27845761,27845899-27846129,
           27846803-27847003,27847257-27847382,27847497-27847558,
           27847775-27847892,27848040-27848324,27848475-27848513
          Length = 1082

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 120 VDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATM 299
           +D   +    VTS+ PK+S V+  P  +V  A    +EN + +  K   LK     KA +
Sbjct: 141 LDGHNIVKFVVTSSSPKKSLVQLVPGTEVAVAPKKRRENSSQDVQKQSALKEEAQTKALL 200

Query: 300 HLR 308
            ++
Sbjct: 201 RVQ 203


>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
            8812361-8812492,8812681-8812864,8813002-8813135,
            8813552-8813656,8813738-8813839,8813930-8814022,
            8814136-8814456,8814595-8814696,8814791-8814853,
            8815213-8815708,8815964-8816124,8816213-8816743,
            8817077-8817118,8817203-8817334,8817639-8817703,
            8817858-8818169,8818262-8818334,8818425-8818517,
            8819440-8819501,8819740-8819809
          Length = 1777

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 141  PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGT 242
            P EV   E + SP  KS    +E   S  KENGT
Sbjct: 1165 PSEVVDDEDQRSPPPKSDHSLIEKESSEVKENGT 1198


>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 120 VDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAE 218
           V KK   P+E  + E K+   K++P  KVEA+E
Sbjct: 239 VQKKAAPPKESKAKEAKKEAPKEAPKPKVEASE 271


>07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,
            5602859-5602935,5603349-5603487,5604306-5604618,
            5605084-5605394,5607245-5609141,5609239-5609374,
            5609519-5609607,5610424-5610507,5611112-5611191,
            5611312-5611446,5612340-5612585
          Length = 1303

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 520  TYPLLQMYYTILIASTMKGXLFVLIKL 600
            T P+L+  Y  ++AST+ G +FV+I L
Sbjct: 1182 TEPVLESVYNCVVASTLLGSIFVMIPL 1208


>09_06_0240 + 21797458-21799369,21799636-21799784
          Length = 686

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 120 VDKKEV--APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMV 278
           +D KE   +PEEV +  PK+ P KK   K    A +   E   +EA  +  +K V
Sbjct: 173 MDDKEAMPSPEEVVAAAPKQKPRKKKGRKAAAKAAAAAVEE-EEEAKVVEPVKEV 226


>02_02_0489 + 10869482-10871218
          Length = 578

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAP 254
           ++ E    + + +EP+  PVKK  AKK + AE+  K    + AP
Sbjct: 89  EEGEEVEGDSSESEPEPEPVKKESAKKAK-AEAKKKRAAPEPAP 131


>06_02_0083 -
           11539955-11540257,11540594-11540742,11540938-11541025,
           11541151-11541462,11541554-11541709,11541941-11542156,
           11542251-11542508,11542740-11542943,11543052-11543096
          Length = 576

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 SPVKKSPAKKVEAAESNGKENGT 242
           SP +   AKKV  A+SNG  NGT
Sbjct: 499 SPNRPVSAKKVPGAKSNGSANGT 521


>01_01_1219 + 9858375-9858483,9859184-9859506
          Length = 143

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
 Frame = +3

Query: 99  ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKK----VEA-AESNGKENGTD--EAPK 257
           A  A A V     AP         +SP+  S  KK    V A AE+  +E GTD  E PK
Sbjct: 24  ALPASANVASTIPAPRLQCKNLSSQSPLNASFTKKRLVSVHASAEAGAEEAGTDQPEEPK 83

Query: 258 ----IRLL------KMVMLKKATMHLRTVMPQKRKRLV 341
               I  +      KM+M ++A M L   + Q+R+RLV
Sbjct: 84  PTVSIETMPLETKQKMIMEQRAKMKLAKKLRQRRRRLV 121


>10_07_0020 -
           11944054-11944653,11944734-11944847,11944917-11944976,
           11945154-11945474,11945556-11945594
          Length = 377

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 257 DSPAENGDAEESNDASENGDATEKKETGVKRKSVA 361
           D PA +   E++ D  E G+  +KK+T VK+KS A
Sbjct: 100 DLPALDPSIEQALDEEEIGE--DKKKTAVKKKSAA 132


>10_01_0275 -
           2904601-2904900,2905083-2905233,2905522-2905598,
           2907201-2907390,2908796-2908981,2910521-2910571,
           2911476-2911885,2912252-2912509,2912768-2913070
          Length = 641

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 149 FLRCNFLLVDGCVCHCCKV 93
           F RC FLL   C+ +CCK+
Sbjct: 423 FGRCCFLLKSVCLANCCKI 441


>05_07_0293 +
           29031318-29031812,29032096-29032158,29032365-29032490,
           29032783-29032911,29033161-29033311,29033853-29033962,
           29034502-29034607,29034697-29034894,29034988-29035030,
           29035129-29035207
          Length = 499

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 192 PAKKVEAAESNGKENGTDEAPKIRLLK 272
           PA    AAE  G+E   D+AP +RLL+
Sbjct: 51  PAAPPPAAEEVGEEEEDDDAPPLRLLE 77


>01_06_1519 +
           37942389-37943702,37944142-37944266,37944358-37944499,
           37944602-37944848,37946139-37946196,37947629-37947913,
           37947988-37948120
          Length = 767

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 126 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
           K E + EE  + EPK       PAK+   AE+   E      P+
Sbjct: 171 KAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAKPAEPE 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,191,966
Number of Sequences: 37544
Number of extensions: 237268
Number of successful extensions: 911
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)