Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060478.seq
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 33 0.28
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0) 31 1.1
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014) 30 1.5
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045) 30 1.5
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_37780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 29 3.5
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 29 3.5
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15) 29 4.6
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 29 4.6
SB_5548| Best HMM Match : PT (HMM E-Value=3.1) 29 4.6
SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 28 6.1
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 28 6.1
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.1
SB_24428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0) 28 6.1
SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16) 28 6.1
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 28 8.1
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 28 8.1
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_26913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1) 28 8.1
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEP-KESPVKKSPAKKVEAAESNGKENGTDEAPK 257
D+KE EE+ EP KE PV++ ++ E +E DE PK
Sbjct: 245 DEKEREQEELVEEEPKKEEPVEEETKQEEPVEEEPKQEEAVDEEPK 290
>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
Length = 1596
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 269 ENGDAEESNDASENGDATEKKETG 340
E G A E+ +ASE G+A+E ETG
Sbjct: 40 EAGKASEAGEASETGEASEASETG 63
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 257 DSPAENGDAEESNDASENGDATEKKETGVKRKS 355
++ E G+A E+ +ASE +A E ETG K+
Sbjct: 64 EATGEAGEASETGEASEASEAGEASETGEAGKA 96
>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
K E APEEV + + +ESP ++ K+ +A + + + E PK
Sbjct: 242 KVEDAPEEVEAPKEEESPKEEDTPKEEDAPKEDTPKEEAKEEPK 285
>SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 96 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGT 242
+ MAD E P E T T E+ K+P+ E E G+E +
Sbjct: 32 IQNMADEEGKATEATPPEATETPAAEAAPAKAPSADAEVQEEAGEETAS 80
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAP 254
+KKE +E TE S KSPA K + S N +D++P
Sbjct: 523 EKKEDEGKEPDKTEQTTSAKSKSPASKDGKSRSQKGSNSSDDSP 566
>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
Length = 134
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -2
Query: 401 SSREWSFLLFLHQEPQISSSHQSLSFLWHHRSQMHRCFLQHHH 273
SS ++ H P SSS S+ + HH + HHH
Sbjct: 76 SSSSSIIIIIHHHHPSSSSSSSSIIIIHHHHPSSSSIIIIHHH 118
>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
Length = 191
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 99 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIR 263
A A+A +KK APEE + + K+ V++S K A +G+ N D+ + R
Sbjct: 58 AKAAEAQPEKKAEAPEEKPAEDSKDQAVEESETKD---ASKDGEGNAADKRARGR 109
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 108 ADAAVDKKEVAPEE-VTSTEPKESPVKKSPAKKVEAAESNGKENGTD 245
+D ++ E+A EE VTS E E V PA+KVEA+ +E G +
Sbjct: 823 SDVPTEEAEMATEEAVTSVEEAEDKV---PAEKVEASIEEAEEPGEE 866
>SB_37780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVK--KSPAKKVEAAESNGKEN 236
D + AP VTS+ P + P+K K+ + +AA SN + N
Sbjct: 116 DVTQSAPTRVTSSLPSKQPIKSSKTSRSQTKAAPSNARLN 155
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 99 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
A D++ D +E +PK+ KK+P K+ ++E + + DE PK
Sbjct: 113 AATEDSSSDDDSSGEDE--DEKPKKKVEKKTPTKQESSSEEDDSSDDKDEKPK 163
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 111 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIR 263
D DK E PEE +P+E P + +P K E + + E+ ++ P+ +
Sbjct: 304 DKLEDKPEDRPEEKPEDKPEEKP-EDNPEDKPEYKQEDKPEDKQEDKPECK 353
>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
Length = 979
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 266 AENGDAEESNDASENGDATEKKETGVKRKSV 358
+E G+A E+ +ASE G+A++ E G ++V
Sbjct: 471 SEAGEASEAGEASEAGEASKASEAGEASEAV 501
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 275 GDAEESNDASENGDATEKKETGV 343
G+A E+ +ASE G+A+E E GV
Sbjct: 771 GEASEAGEASEVGEASEAGENGV 793
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 266 AENGDAEESNDASENGDATEKKETGVKRKSVA 361
+E G+A E+ +ASE G+A+E E +++A
Sbjct: 924 SEAGEASEAGEASEAGEASEAVEASEASEAIA 955
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 266 AENGDAEESNDASENGDATEKKETG 340
+E G+A E+ +ASE G+A++ E G
Sbjct: 438 SEAGEASEAGEASEAGEASKASEAG 462
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 248 SPKDSPAENGDAEESNDASENGDATEKKETG 340
S E G+A E+ +ASE G+A+E E G
Sbjct: 738 SEASKAGEAGEAVEAGEASEAGEASEAGEAG 768
>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 266 AENGDAEESNDASENGDATEKKETG 340
+E G+A E+ +ASE G+A+E E G
Sbjct: 52 SEAGEASEAGEASEAGEASEAGEAG 76
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 266 AENGDAEESNDASENGDATEKKETG 340
+E G+A E+ +ASE G+A+E E G
Sbjct: 202 SEAGEASEAGEASEAGEASEAGEAG 226
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 266 AENGDAEESNDASENGDATEKKETG 340
+E G+A E+ +ASE G+A E E G
Sbjct: 58 SEAGEASEAGEASEAGEAGEASEAG 82
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 266 AENGDAEESNDASENGDATEKKETG 340
+E G+A E+ +ASE G+A E E G
Sbjct: 208 SEAGEASEAGEASEAGEAGEASEAG 232
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -3
Query: 238 PFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAI 104
P SLP S+ L DFLT S S +TSS + S T++S++
Sbjct: 470 PSSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSSSLSDFLTSSSSL 514
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 226 PLLSAASTFLAGDFLTGDSFGSVEVTSSGATS-FLSTAAS 110
P+ FL DFLT S S +TSS + S FLS ++S
Sbjct: 304 PISEQQGIFLPSDFLTSSSLPSDFLTSSSSLSDFLSLSSS 343
>SB_5548| Best HMM Match : PT (HMM E-Value=3.1)
Length = 157
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 141 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
PE+ T +P++ PV+K P K E E+ ++ P+
Sbjct: 70 PEDRTEYKPEDKPVEKKPEGKPENQPEKKPEDKPEDKPE 108
>SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -2
Query: 317 HHRSQMHRCFLQHHHFQQANLW--GFIGTILFAITFCSF-NFLSWRLLDW 177
H R+ H QHH F + NL + TI+ C + W LLD+
Sbjct: 108 HERAPKHERHAQHHQFHRENLQIIKTLATIVILFAVCLLPGQVLWMLLDF 157
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 257 DSPAENGDAEESNDASENGDATEKKETG 340
D+ A+NG A + NDA GD + + G
Sbjct: 439 DNDADNGGAGDDNDADNGGDGCDGDDDG 466
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 293 CFLQHHHFQQANLWGFIGTILFAITFCSFNFLSW 192
CFL F +AN+ G I+F +T+ + + W
Sbjct: 61 CFLISVFFSRANVSAACGGIIFFVTYLPYTMVRW 94
>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 921
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 96 LATMADAAVDKKEVAPEEVTSTEPKESPVK-----KSPAKKVEAAESNGKENGTDEAPKI 260
+A A AA DK+E + E +T E+PVK + K EA E G E D+ K+
Sbjct: 409 VAARAKAANDKQEPSLTEDKATPCAETPVKDTIQNEKLIPKTEADEPTGNEVSCDKCGKL 468
>SB_24428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 374 FLHQEPQISSSHQSLSFLWHHRSQMHRCF 288
FL + ISSS + LW +RS+ HR F
Sbjct: 398 FLKESGWISSSRFCVVHLWRNRSERHRFF 426
>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 803
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATMH 302
D++ VA + V+S P+ A + S G NG+ EAP+ KMV +K
Sbjct: 459 DEEGVAAQGVSSVTPEAGSALSVIALEERGRSSTGSPNGSLEAPEELQEKMVGGEKKG-- 516
Query: 303 LRTVMPQKRKR 335
T + +KRK+
Sbjct: 517 -DTKLKEKRKQ 526
>SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)
Length = 465
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 254 KDSPAENGDAEESNDASENGD 316
K PAENG E D ENGD
Sbjct: 442 KPMPAENGHVSEVADTKENGD 462
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 293 NDASENGDATEKKETGVKRKSV 358
+D SEN DAT+ ETG K + V
Sbjct: 738 SDQSENNDATDGSETGDKNQEV 759
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 257 DSPAENGDAEESNDASENGDATEKKETGV 343
D AEN D +E NDA ++ + E+ + V
Sbjct: 37 DPGAENDDEQEKNDADDSDEVKEEDDVSV 65
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKK 290
+ + V PE V E +S V+K+P KK ++ E ++ +I ++K+ K+
Sbjct: 1509 EPESVPPESVPHKELGKSKVEKTPEKKKGKEKTEDSEEYYEDTEEIVVVKIKRKKR 1564
>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 474 LGLLNAQCPLELTHIHISAPTNVLHHTDSLYYEGXALCAD 593
LG + PL+L +++ P+ H D L +G A CA+
Sbjct: 742 LGYIEWLPPLKLNDLNVPEPSTGNPHEDQLKSDGGAKCAE 781
>SB_26913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 141 PEEVTSTEPKESPVKKSPAKKVEAAESNGKEN 236
PE+ T + ++ P K+P + AAE +GKEN
Sbjct: 79 PEDSTKKKRRKKP--KTPTRASAAAEESGKEN 108
>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 782
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKK 290
+ + V PE V E +S V+K+P KK ++ E ++ +I ++K+ K+
Sbjct: 40 EPESVPPESVPHKELGKSKVEKTPEKKKGKEKTEDSEEYYEDTEEIVVVKIKRKKR 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,401
Number of Sequences: 59808
Number of extensions: 292038
Number of successful extensions: 3451
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3425
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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