Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060478.seq
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064350-1|AAH64350.1|  801|Homo sapiens MAP7D3 protein protein.       36   0.13 
AL078638-13|CAM21578.1|  802|Homo sapiens MAP7 domain containing...    36   0.13 
AL078638-12|CAI41063.2|  876|Homo sapiens MAP7 domain containing...    36   0.13 
AL078638-11|CAI41064.2|  841|Homo sapiens MAP7 domain containing...    36   0.13 
AK022463-1|BAB14044.1|  507|Homo sapiens protein ( Homo sapiens ...    36   0.13 
BC040518-1|AAH40518.1|  904|Homo sapiens MAP7D3 protein protein.       34   0.41 
Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein.          31   3.8  
BC072400-1|AAH72400.1|  414|Homo sapiens THOC2 protein protein.        31   3.8  
AL030996-5|CAI42273.1|  387|Homo sapiens THO complex 2 protein.        31   3.8  
AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein.        31   3.8  
AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein.        31   3.8  
AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein.                 31   3.8  

>BC064350-1|AAH64350.1|  801|Homo sapiens MAP7D3 protein protein.
          Length = 801

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = +3

Query: 132 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATMHLRT 311
           EVAP+E     PKES ++ SP   V+A+     E   + +PK +       KK+ M  + 
Sbjct: 381 EVAPKESVKGSPKES-MEASPEAMVKASPKTSLEASMEASPKAKARDAP--KKSEMDKQA 437

Query: 312 VMPQKRKRL 338
           ++P  +KRL
Sbjct: 438 LIPIAKKRL 446


>AL078638-13|CAM21578.1|  802|Homo sapiens MAP7 domain containing 3
           protein.
          Length = 802

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = +3

Query: 132 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATMHLRT 311
           EVAP+E     PKES ++ SP   V+A+     E   + +PK +       KK+ M  + 
Sbjct: 382 EVAPKESVKGSPKES-MEASPEAMVKASPKTSLEASMEASPKAKARDAP--KKSEMDKQA 438

Query: 312 VMPQKRKRL 338
           ++P  +KRL
Sbjct: 439 LIPIAKKRL 447


>AL078638-12|CAI41063.2|  876|Homo sapiens MAP7 domain containing 3
           protein.
          Length = 876

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = +3

Query: 132 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATMHLRT 311
           EVAP+E     PKES ++ SP   V+A+     E   + +PK +       KK+ M  + 
Sbjct: 423 EVAPKESVKGSPKES-MEASPEAMVKASPKTSLEASMEASPKAKARDAP--KKSEMDKQA 479

Query: 312 VMPQKRKRL 338
           ++P  +KRL
Sbjct: 480 LIPIAKKRL 488


>AL078638-11|CAI41064.2|  841|Homo sapiens MAP7 domain containing 3
           protein.
          Length = 841

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = +3

Query: 132 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATMHLRT 311
           EVAP+E     PKES ++ SP   V+A+     E   + +PK +       KK+ M  + 
Sbjct: 388 EVAPKESVKGSPKES-MEASPEAMVKASPKTSLEASMEASPKAKARDAP--KKSEMDKQA 444

Query: 312 VMPQKRKRL 338
           ++P  +KRL
Sbjct: 445 LIPIAKKRL 453


>AK022463-1|BAB14044.1|  507|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12401 fis, clone MAMMA1002796. ).
          Length = 507

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = +3

Query: 132 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATMHLRT 311
           EVAP+E     PKES ++ SP   V+A+     E   + +PK +       KK+ M  + 
Sbjct: 289 EVAPKESVKGSPKES-MEASPEAMVKASPKTSLEASMEASPKAKARDAP--KKSEMDKQA 345

Query: 312 VMPQKRKRL 338
           ++P  +KRL
Sbjct: 346 LIPIAKKRL 354


>BC040518-1|AAH40518.1|  904|Homo sapiens MAP7D3 protein protein.
          Length = 904

 Score = 34.3 bits (75), Expect = 0.41
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +3

Query: 132 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKKATMHLRT 311
           EVAP+E     PKES ++ SP   V+ +     E   + +PK +       KK+ M  + 
Sbjct: 451 EVAPKESVKGSPKES-MEASPEAMVKTSPKTSLEASMEASPKAKARDAP--KKSEMDKQA 507

Query: 312 VMPQKRKRL 338
           ++P  +KRL
Sbjct: 508 LIPIAKKRL 516


>Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein.
          Length = 1593

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 156  STEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVM-LKKATMHLRTVMPQKRK 332
            S  P ESP      K+   ++S+GKE G+D     ++ K+    KK + H +  + +K K
Sbjct: 1514 SESPCESPYPNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKKESRHDKEKIEKKEK 1573

Query: 333  R 335
            R
Sbjct: 1574 R 1574


>BC072400-1|AAH72400.1|  414|Homo sapiens THOC2 protein protein.
          Length = 414

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 156 STEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVM-LKKATMHLRTVMPQKRK 332
           S  P ESP      K+   ++S+GKE G+D     ++ K+    KK + H +  + +K K
Sbjct: 335 SESPCESPYPNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKKESRHDKEKIEKKEK 394

Query: 333 R 335
           R
Sbjct: 395 R 395


>AL030996-5|CAI42273.1|  387|Homo sapiens THO complex 2 protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 156 STEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVM-LKKATMHLRTVMPQKRK 332
           S  P ESP      K+   ++S+GKE G+D     ++ K+    KK + H +  + +K K
Sbjct: 308 SESPCESPYPNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKKESRHDKEKIEKKEK 367

Query: 333 R 335
           R
Sbjct: 368 R 368


>AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein.
          Length = 1593

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 156  STEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVM-LKKATMHLRTVMPQKRK 332
            S  P ESP      K+   ++S+GKE G+D     ++ K+    KK + H +  + +K K
Sbjct: 1514 SESPCESPYPNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKKESRHDKEKIEKKEK 1573

Query: 333  R 335
            R
Sbjct: 1574 R 1574


>AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein.
          Length = 1593

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 156  STEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVM-LKKATMHLRTVMPQKRK 332
            S  P ESP      K+   ++S+GKE G+D     ++ K+    KK + H +  + +K K
Sbjct: 1514 SESPCESPYPNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKKESRHDKEKIEKKEK 1573

Query: 333  R 335
            R
Sbjct: 1574 R 1574


>AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein.
          Length = 1478

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 156  STEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVM-LKKATMHLRTVMPQKRK 332
            S  P ESP      K+   ++S+GKE G+D     ++ K+    KK + H +  + +K K
Sbjct: 1399 SESPCESPYPNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKKESRHDKEKIEKKEK 1458

Query: 333  R 335
            R
Sbjct: 1459 R 1459


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,045,540
Number of Sequences: 237096
Number of extensions: 1333760
Number of successful extensions: 4738
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4723
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)