Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060478.seq
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97014-2|AAB52426.2| 151|Caenorhabditis elegans Histone h1 like... 31 0.58
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z78015-4|CAB01436.2| 149|Caenorhabditis elegans Hypothetical pr... 31 0.77
U61958-3|AAB03180.2| 149|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z92803-7|CAB07244.1| 445|Caenorhabditis elegans Hypothetical pr... 31 1.0
U40933-6|AAQ23123.1| 199|Caenorhabditis elegans C.elegans homeo... 30 1.3
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 30 1.3
Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical pr... 30 1.8
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 3.1
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 29 3.1
AF016684-4|AAB66208.1| 159|Caenorhabditis elegans Hypothetical ... 29 3.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 3.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 3.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 3.1
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 29 3.1
U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin p... 29 4.1
Z78012-5|CAB01415.1| 590|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z75546-5|CAA99893.2| 335|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical ... 28 5.4
AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek (dictyos... 28 5.4
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 28 5.4
Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical p... 28 7.1
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 28 7.1
Z68880-9|CAA93099.1| 255|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z68879-12|CAA93091.1| 255|Caenorhabditis elegans Hypothetical p... 28 7.1
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 7.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 7.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 7.1
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 27 9.4
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 27 9.4
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 27 9.4
>U97014-2|AAB52426.2| 151|Caenorhabditis elegans Histone h1 like
protein 8 protein.
Length = 151
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 150 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA 251
+T+ +P+ SP+KKSP++ + + K G +E+
Sbjct: 111 LTTQDPQNSPLKKSPSRAAAGGKGDSKAQGDNES 144
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 102 TMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAA 215
T D + KK + +T+PK+ +K SPAKK E A
Sbjct: 1105 TSKDPKLSKKAPVEKPKPTTDPKDDKLKPSPAKKPEKA 1142
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 257 DSPAENGD-AEESNDASENGDATEKKETGVKRKS 355
DSP + D +++S+DASEN ++E E K+K+
Sbjct: 46 DSPESSSDQSDDSDDASENSSSSEPDEPAPKKKN 79
>Z78015-4|CAB01436.2| 149|Caenorhabditis elegans Hypothetical
protein R02D5.7 protein.
Length = 149
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 96 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESN-GKENGTDE 248
LAT AA K+E P E E K K AK ++++S K++G DE
Sbjct: 73 LATPGPAAPKKEEAPPPEKPKKEEKPKEKSKKSAKSKKSSKSKKDKKDGEDE 124
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAP 254
KKE P+E + K KS K + + NG EN D P
Sbjct: 93 KKEEKPKEKSKKSAKSKKSSKSKKDKKDGEDENGYENCQDMTP 135
>U61958-3|AAB03180.2| 149|Caenorhabditis elegans Hypothetical
protein C25A8.2 protein.
Length = 149
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAP 254
KKE P+E + K KS K + E NG EN D P
Sbjct: 93 KKEEKPKEKSKKSAKSKKSSKSKKDKKDGEEENGYENCQDMTP 135
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 96 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESN-GKENGTDE 248
LAT AA K+E P E E K K AK ++++S K++G +E
Sbjct: 73 LATPVPAAPKKEEAPPPEEPKKEEKPKEKSKKSAKSKKSSKSKKDKKDGEEE 124
>Z92803-7|CAB07244.1| 445|Caenorhabditis elegans Hypothetical
protein K01G5.5 protein.
Length = 445
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVKKS-PAKKVEAAESN 224
KKEV EE E +E+P KKS +KK E+++S+
Sbjct: 410 KKEVKKEETPDEEEEEAPKKKSKKSKKQESSDSD 443
>U40933-6|AAQ23123.1| 199|Caenorhabditis elegans C.elegans homeobox
protein 19,isoform b protein.
Length = 199
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 254 KDSPAENG-DAEESNDASENGDATEKKE 334
K +P E G D EE ND+ +NG+ E++E
Sbjct: 12 KSNPVEEGNDFEEENDSEKNGEEDEEEE 39
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVK--KSPAK-------KVEAAESNG--KENGTDEAPK 257
A V+ +E + E E +ESP+K K+P K KVE+ ES+G +E +E+PK
Sbjct: 459 AKVESEEPSDNEEEEEEVEESPIKKDKTPRKYSRKSAAKVESTESSGNEEEEEVEESPK 517
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 108 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES--NGKENGTDEAPK 257
+D V++ E +P++ T K SP K PA KVE+ ES N +E +E+PK
Sbjct: 570 SDNEVEEVEDSPKKNDKTLRK-SPRK--PAAKVESEESFGNEEEEEVEESPK 618
>Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/85 (20%), Positives = 40/85 (47%)
Frame = +3
Query: 96 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKM 275
L ++ + + +E EE P +S ++P+ +++ S+ ++ +D APK ++
Sbjct: 13 LVCLSSSDSENEEEEEEEEIQPGPADSSESENPSSSSDSSSSDS-DSDSDAAPKKNIIAP 71
Query: 276 VMLKKATMHLRTVMPQKRKRLV*RG 350
H V+P+ R+ ++ G
Sbjct: 72 RRRGVLLQHHLNVLPETRRLIICSG 96
>Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/85 (20%), Positives = 40/85 (47%)
Frame = +3
Query: 96 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKM 275
L ++ + + +E EE P +S ++P+ +++ S+ ++ +D APK ++
Sbjct: 13 LVCLSSSDSENEEEEEEEEIQPGPADSSESENPSSSSDSSSSDS-DSDSDAAPKKNIIAP 71
Query: 276 VMLKKATMHLRTVMPQKRKRLV*RG 350
H V+P+ R+ ++ G
Sbjct: 72 RRRGVLLQHHLNVLPETRRLIICSG 96
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKI-RLLKMVMLKKATM 299
+ KE +PE+ +PK KKSP + +S E APK+ R LK+ + K +
Sbjct: 1843 ESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKPPAPKLTRDLKLQTVNKTDL 1901
Query: 300 -HLRTVM 317
H V+
Sbjct: 1902 AHFEVVV 1908
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 248
A+ KKE +PE+ E K SP +KSP K E +S K+ + E
Sbjct: 1702 ASPTKKEKSPEKSVVEEVK-SPKEKSPEKAEEKPKSPTKKEKSPE 1745
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVK--KSPAKKVEAAESNGKENGTDEAP 254
KK+ +PE+ + TE +SPVK KSP K E S K+ + E P
Sbjct: 1544 KKDKSPEK-SITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKP 1587
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESN 224
A+ KKE +PE+ S K KSP KK ++ E +
Sbjct: 1575 ASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEKS 1611
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKES--PVKKSPAKKVEAAESNGKENGTDEAPK 257
++KE +++ +E P KK PAKK +A+ S ++ +E+P+
Sbjct: 30 ERKEKRAQKLKEKREREGKPPPKKRPAKKRKASSSEEDDDDEEESPR 76
>AF016684-4|AAB66208.1| 159|Caenorhabditis elegans Hypothetical
protein F45C12.9 protein.
Length = 159
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 41 TRVLNFYSLFKLFHFFNLPCNNGR 112
T +LN+Y L LF+F+ + C +G+
Sbjct: 60 TCILNYYYLCNLFNFYGIVCEDGQ 83
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKI-RLLKMVMLKKATM 299
+ KE +PE+ +PK KKSP + +S E APK+ R LK+ + K +
Sbjct: 1843 ESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKPPAPKLTRDLKLQTVNKTDL 1901
Query: 300 -HLRTVM 317
H V+
Sbjct: 1902 AHFEVVV 1908
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 248
A+ KKE +PE+ E K SP +KSP K E +S K+ + E
Sbjct: 1702 ASPTKKEKSPEKSVVEEVK-SPKEKSPEKAEEKPKSPTKKEKSPE 1745
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVK--KSPAKKVEAAESNGKENGTDEAP 254
KK+ +PE+ + TE +SPVK KSP K E S K+ + E P
Sbjct: 1544 KKDKSPEK-SITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKP 1587
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESN 224
A+ KKE +PE+ S K KSP KK ++ E +
Sbjct: 1575 ASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEKS 1611
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKI-RLLKMVMLKKATM 299
+ KE +PE+ +PK KKSP + +S E APK+ R LK+ + K +
Sbjct: 1843 ESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKPPAPKLTRDLKLQTVNKTDL 1901
Query: 300 -HLRTVM 317
H V+
Sbjct: 1902 AHFEVVV 1908
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 248
A+ KKE +PE+ E K SP +KSP K E +S K+ + E
Sbjct: 1702 ASPTKKEKSPEKSVVEEVK-SPKEKSPEKAEEKPKSPTKKEKSPE 1745
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVK--KSPAKKVEAAESNGKENGTDEAP 254
KK+ +PE+ + TE +SPVK KSP K E S K+ + E P
Sbjct: 1544 KKDKSPEK-SITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKP 1587
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESN 224
A+ KKE +PE+ S K KSP KK ++ E +
Sbjct: 1575 ASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEKS 1611
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKI-RLLKMVMLKKATM 299
+ KE +PE+ +PK KKSP + +S E APK+ R LK+ + K +
Sbjct: 1843 ESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKPPAPKLTRDLKLQTVNKTDL 1901
Query: 300 -HLRTVM 317
H V+
Sbjct: 1902 AHFEVVV 1908
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 248
A+ KKE +PE+ E K SP +KSP K E +S K+ + E
Sbjct: 1702 ASPTKKEKSPEKSVVEEVK-SPKEKSPEKAEEKPKSPTKKEKSPE 1745
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVK--KSPAKKVEAAESNGKENGTDEAP 254
KK+ +PE+ + TE +SPVK KSP K E S K+ + E P
Sbjct: 1544 KKDKSPEK-SITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKP 1587
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESN 224
A+ KKE +PE+ S K KSP KK ++ E +
Sbjct: 1575 ASPTKKEKSPEKPASPTKKSENEVKSPTKKEKSPEKS 1611
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKES--PVKKSPAKKVEAAESNGKENGTDEAPK 257
++KE +++ +E P KK PAKK +A+ S ++ +E+P+
Sbjct: 30 ERKEKRAQKLKEKREREGKPPPKKRPAKKRKASSSEEDDDDEEESPR 76
>U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical
protein F32E10.6 protein.
Length = 374
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
++++ EEV T PK+S KSP KK + AE++ +E+ +E K
Sbjct: 276 EEEDEVEEEVVKT-PKKSKSSKSP-KKSKRAETSDEEDEDEEDEK 318
>U41534-4|AAB47596.1| 323|Caenorhabditis elegans Hypothetical
protein C16A3.6 protein.
Length = 323
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 111 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKE 233
D+ D +E E + EP + VKK P KK ++GK+
Sbjct: 258 DSDEDDEEGGDEPMEIEEPPKKKVKKEPKKKTGKKAADGKK 298
>AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin
protein 17 protein.
Length = 438
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +3
Query: 102 TMADAAVDKKEVAPEE---VTSTEPKESPVKK 188
TMA V ++EV PEE +T+T K PVKK
Sbjct: 232 TMAPEEVPEEEVIPEEEEEITTTTRKTRPVKK 263
>Z78012-5|CAB01415.1| 590|Caenorhabditis elegans Hypothetical
protein C52E4.5 protein.
Length = 590
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 141 PEEVTSTEPKESPVKKSPAKKVEAAE 218
P E TSTEP+E+ V K+P + E E
Sbjct: 96 PGEKTSTEPEETGVGKAPIQTSEGLE 121
>Z75546-5|CAA99893.2| 335|Caenorhabditis elegans Hypothetical
protein R05D11.6 protein.
Length = 335
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 174 SPVKKSPAKKVEAAESNGKENGTDEAPKIRLLK 272
S VK S AKK +A +++ E +DE+ K+++ K
Sbjct: 82 SYVKASAAKKRQAVKTSDLEGASDESKKVKMEK 114
>AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical
protein K10F12.4a protein.
Length = 309
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 129 KEVAPEEVTSTEPKESP---VKKSPAKKVEAAESNGK 230
K+ P EV + P SP + KSP +V A E NGK
Sbjct: 119 KKNIPVEVVNVNPDRSPNWYLPKSPIGRVPALEINGK 155
>AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform c protein.
Length = 536
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 111 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKEN 236
D + K+ P E T+ + K+ K+SP KK +S GKEN
Sbjct: 112 DPETETKKKDPSEQTNGQVKKKSDKQSPKKK---EKSEGKEN 150
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 111 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKEN 236
D + K+ P E T+ + K+ K+SP KK +S GKEN
Sbjct: 112 DPETETKKKDPSEQTNGQVKKKSDKQSPKKK---EKSEGKEN 150
>Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical
protein C25A1.10b protein.
Length = 696
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +3
Query: 99 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
A +A+ + + +E T + +P K +P ++ AES+ + ++ PK
Sbjct: 517 AVKKEASSSSDDSSDDEKTKKKSATTPAKSTPKTALKKAESSDSSDDDEDLPK 569
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +3
Query: 99 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
A +A+ + + +E T + +P K +P ++ AES+ + ++ PK
Sbjct: 792 AVKKEASSSSDDSSDDEKTKKKSATTPAKSTPKTALKKAESSDSSDDDEDLPK 844
>Z68880-9|CAA93099.1| 255|Caenorhabditis elegans Hypothetical
protein K08F4.9 protein.
Length = 255
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 229 LPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAAS 110
LPLL A++ ++GD LT D V + S A+ L+ S
Sbjct: 127 LPLLQKAASHVSGDSLTPDRAAIVNIGSDCASQALNLRGS 166
>Z68879-12|CAA93091.1| 255|Caenorhabditis elegans Hypothetical
protein K08F4.9 protein.
Length = 255
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 229 LPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAAS 110
LPLL A++ ++GD LT D V + S A+ L+ S
Sbjct: 127 LPLLQKAASHVSGDSLTPDRAAIVNIGSDCASQALNLRGS 166
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 99 ATMADAAVDKKEVAPEEVTSTEPKESPVK-KSPAKKVEAAESNGKENGTDEAPKIRLLKM 275
AT DKK+ E+T+ + + K ++ +K ++AAE K+ ++ K++L
Sbjct: 9556 ATSKQKETDKKQKLEAEITAKKSADEKSKLETESKLIKAAEDAAKKQ-KEKEDKLKLEAD 9614
Query: 276 VMLKKA 293
V KKA
Sbjct: 9615 VASKKA 9620
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 99 ATMADAAVDKKEVAPEEVTSTEPKESPVK-KSPAKKVEAAESNGKENGTDEAPKIRLLKM 275
AT DKK+ E+T+ + + K ++ +K ++AAE K+ ++ K++L
Sbjct: 9576 ATSKQKETDKKQKLEAEITAKKSADEKSKLETESKLIKAAEDAAKKQ-KEKEDKLKLEAD 9634
Query: 276 VMLKKA 293
V KKA
Sbjct: 9635 VASKKA 9640
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 99 ATMADAAVDKKEVAPEEVTSTEPKESPVK-KSPAKKVEAAESNGKENGTDEAPKIRLLKM 275
AT DKK+ E+T+ + + K ++ +K ++AAE K+ ++ K++L
Sbjct: 9576 ATSKQKETDKKQKLEAEITAKKSADEKSKLETESKLIKAAEDAAKKQ-KEKEDKLKLEAD 9634
Query: 276 VMLKKA 293
V KKA
Sbjct: 9635 VASKKA 9640
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 251 PKD-SPAENGDAEESNDASENGDATEKKETG 340
PKD +P NG+A+ + A+ NG+ T +TG
Sbjct: 128 PKDKAPIMNGNAKNAPAANRNGNNTSTAKTG 158
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 251 PKD-SPAENGDAEESNDASENGDATEKKETG 340
PKD +P NG+A+ + A+ NG+ T +TG
Sbjct: 325 PKDKAPIMNGNAKNAPAANRNGNNTSTAKTG 355
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 117 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA 251
A+ K+ ++ + + E + KK+ A K E+ ESN +G+DE+
Sbjct: 650 AISKEYISDSDDSDDEEPKKKEKKA-APKEESEESNNGSDGSDES 693
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,656,459
Number of Sequences: 27780
Number of extensions: 221619
Number of successful extensions: 1201
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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