Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060478.seq
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g44780.1 68414.m05130 expressed protein ; expression supporte... 34 0.076
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 34 0.10
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 32 0.31
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 31 0.94
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 30 1.2
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 30 1.6
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 29 2.2
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 29 2.2
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 29 2.9
At1g18940.1 68414.m02357 nodulin family protein similar to nodul... 29 2.9
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 29 2.9
At5g58280.1 68418.m07296 transcriptional factor B3 family protei... 28 6.6
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc... 28 6.6
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc... 28 6.6
At4g07380.1 68417.m01133 hypothetical protein 28 6.6
At4g02810.1 68417.m00381 expressed protein 28 6.6
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 28 6.6
At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative (... 28 6.6
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 28 6.6
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 27 8.8
At4g31880.1 68417.m04531 expressed protein 27 8.8
At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ... 27 8.8
>At1g44780.1 68414.m05130 expressed protein ; expression supported
by MPSS
Length = 471
Score = 34.3 bits (75), Expect = 0.076
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 248 SPKDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 364
S D P ++ + EESN+ +E G +E+K V++K++ L
Sbjct: 419 SESDEPEDSENEEESNEKAERGSQSEEKRMMVEKKAIEL 457
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 260 SPAENGDAEESNDASENGDATEKKET 337
S +E+GD+ E+N+ASE+GD E K T
Sbjct: 276 SESEDGDSVEANNASEDGDTVEDKNT 301
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 254 KDSPAENGDAEESNDASENGDATEKKETGVKRK 352
K +PA+N D+EE D S+ D E KE VK+K
Sbjct: 251 KSTPAKNSDSEEMFD-SDGEDEEEDKEVAVKKK 282
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 30.7 bits (66), Expect = 0.94
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Frame = +3
Query: 96 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPA--------KKVEAAESNGKENGTDEA 251
L T + V + EV P EP+E PV +P VEAA S+ +N T +
Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNLTVEAASSSSSDNKTVVS 199
Query: 252 PKIRL 266
P RL
Sbjct: 200 PASRL 204
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 105 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
M D + PE+ EPK+ + P K+ EA + GK+ G EAPK
Sbjct: 62 MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEG--EAPK 110
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPK 257
DKKE EEV S PK KK +K EAA E+ +++ K
Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAAVDAEDESAAEKSEK 546
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +3
Query: 111 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKK 290
D AV V S+ KE ++ +KK+E AE +EN +E K KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 291 ATMHLRTVMPQK 326
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +3
Query: 111 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPKIRLLKMVMLKK 290
D AV V S+ KE ++ +KK+E AE +EN +E K KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 291 ATMHLRTVMPQK 326
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
identical to like heterochromatin protein LHP1
[Arabidopsis thaliana] GI:15625407; contains Pfam
profile PF00385: 'chromo' (CHRromatin Organization
MOdifier)
Length = 445
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 257 DSPAENGDAEESNDASENGDATEKKETG 340
D P E+GD EE D E+ E+ E G
Sbjct: 64 DRPTEDGDEEEEEDEDEDDGGDEEDEEG 91
>At1g18940.1 68414.m02357 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 526
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 538 MYYTILIASTMKGXLFVLIKLGYIYNHXII 627
+Y TI IAS M +F + +GYIY+ II
Sbjct: 445 IYNTISIASPMGSYIFSVRLIGYIYDRTII 474
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 254 KDSPAENGDAEESNDASENGDATEKKETGVKRKSV 358
KD+PAE+ DAE+ + E GD ++ + + KSV
Sbjct: 375 KDAPAES-DAEDEPEDDEGGDDSDSESKAEETKSV 408
>At5g58280.1 68418.m07296 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 273
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 260 SPAENGDAEESNDASENGDATEKKETGVKRKSVAL 364
+P+E + EE D E+GD E KR SV L
Sbjct: 234 TPSEEEEEEEDKDVEESGD-EEHSSRATKRSSVRL 267
>At4g39040.2 68417.m05530 expressed protein contains PF01985:
Uncharacterised protein family
Length = 280
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 278 DAEESNDASENGDATEKKETGVKRKS 355
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g39040.1 68417.m05529 expressed protein contains PF01985:
Uncharacterised protein family
Length = 296
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 278 DAEESNDASENGDATEKKETGVKRKS 355
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g07380.1 68417.m01133 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 123 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTD 245
D + + EEV+ E + K K E ++NG++NGT+
Sbjct: 85 DPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTE 125
>At4g02810.1 68417.m00381 expressed protein
Length = 271
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 177 PVKKSPAKKVE---AAESNGKENGTDEAPKIRLLKMVMLKKATMHLRTVMPQKRKRLV*R 347
P++K K+ ES G ENG+D ++ LL + + T PQK + R
Sbjct: 53 PIEKRSVAKLSLEMCTESLGTENGSDSGDEMSLLALEATNISKSPRLTTKPQKETSFMTR 112
Query: 348 GN 353
N
Sbjct: 113 EN 114
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 254 KDSPAENGDAEESNDASENGDATEKKETGVKRKSVA 361
K + + +++ +D E TEKK K+KSVA
Sbjct: 295 KQTDTKTESSDDDDDEKEENSKTEKKTVADKKKSVA 330
>At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative
(AMP1) identical to GI:15624092 glutamate
carboxypeptidase {Arabidopsis thaliana}; ileal
peptidase, Rattus norvegicus, EMBL:AF009921; identical
to cDNA glutamate carboxypeptidase (AMP1) GI:15624091;
contains Pfam profiles PF04389: Peptidase family M28,
PF04253: Transferrin receptor-like dimerisation domain
and PF02225 PA domain
Length = 705
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 287 LQHHHFQQANLWGFIGTILFAITFCSFNFLSW 192
L H H A +WG +G +L F+++S+
Sbjct: 530 LFHRHVAMAGIWGLLGILLADEPLIPFDYISY 561
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 111 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTD 245
+A + V P+ + +P+E+ ++ A++ EAAE+ G+E G +
Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQE 461
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +3
Query: 126 KKEVAPEEVTSTEPKESPVK----KSP--AKKVEAA-ESNGKENGTDEAPKIRLLKMVML 284
KK+ EE T EP ES K K+P KK EA E ++ + K R K
Sbjct: 769 KKQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKPKH 828
Query: 285 KKATMHLRTVMPQKRKR 335
+ + T P+K+K+
Sbjct: 829 DEEEVPNETEKPEKKKK 845
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 114 AAVDKKEVAPEEVTSTEPKESPVKKSPAK 200
A+ KKE + TS++ K PVK PAK
Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAK 813
>At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 639
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 56 FYSLFKLFHFFNLPCNNGRRSRRQEGSCT 142
FYSL F++ CNN +EGSC+
Sbjct: 229 FYSLASEPQQFSIYCNNSNYVEEREGSCS 257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,750,304
Number of Sequences: 28952
Number of extensions: 199376
Number of successful extensions: 853
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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