Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060476.seq
         (587 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    27   0.16 
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   4.4  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   4.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +2

Query: 59  DYHENGSLHDYLQTVVLDSNSLMTMTYSIVSGLAHLHMDIYGTKGKXAIAHRDIKSKNIL 238
           D+H     +D+    ++    L+++   +  G+ HL         K  + HRD+ ++N+L
Sbjct: 577 DFHNMSFENDF----IIQPKHLLSIARQVALGMEHL--------AKTRVVHRDLAARNVL 624

Query: 239 VKRN 250
           V  N
Sbjct: 625 VCEN 628


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 169 HGHIRHEGQAGDRAPRHQEQEH 234
           H  IR      DR PRH  +EH
Sbjct: 245 HIPIRQCDDHRDRPPRHFHEEH 266


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 262 WRTPVALHEDVLALDVAVRDR 200
           + TP +LH +  A+D+   DR
Sbjct: 45  YHTPESLHYEGRAVDITTSDR 65


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 281 PCGTSPSGTRWTSR 322
           PCGTS +   WT +
Sbjct: 227 PCGTSGNPLEWTGQ 240


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 489 GSTNCALSXLRSADTLXHTSRAST 418
           GSTN       +AD+  HT  AST
Sbjct: 46  GSTNGDGGARSNADSTSHTDGAST 69


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 489 GSTNCALSXLRSADTLXHTSRAST 418
           GSTN       +AD+  HT  AST
Sbjct: 202 GSTNGDGGARSNADSTSHTDGAST 225


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,648
Number of Sequences: 336
Number of extensions: 1542
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)