Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060476.seq
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                29   0.034
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.24 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.73 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.73 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 0.034
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 77  SLHDYLQTVVLDSNSLMTMTYSIVSGLAHLHMDIYGTKGKXAIAHRDIKSKNILVKRNGR 256
           +L + L   +L  N  + +  SI   L   H           I H D+K KNIL+ +NG+
Sbjct: 142 TLQNRLDEAILIKNERICILKSITCALQFCH--------NAGIVHADVKPKNILMSKNGQ 193


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 84   CSEPFSW*SVIRSIWVQEPVPLMSAAMN 1
            CS+ FS   VI SI V + +PL++A ++
Sbjct: 976  CSDYFSQGGVIESIMVSDYLPLVAATLS 1003


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 203 IAHRDIKSKNILVKRNGRA 259
           + HRD+K KN+L+    RA
Sbjct: 718 LVHRDVKLKNVLLDIENRA 736


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 203 IAHRDIKSKNILVKRNGRA 259
           + HRD+K KN+L+    RA
Sbjct: 756 LVHRDVKLKNVLLDIENRA 774


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 145 SERPRASAHGHIRHEGQAGDRAPRHQEQEHPREAQR 252
           S  P+A A    + + Q   + P+ Q+Q+  ++ Q+
Sbjct: 819 STHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQ 854


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 227 KNILVKRNGRAPSQTSVWP 283
           +N +++ + +AP Q+  WP
Sbjct: 573 ENTIIRNSQQAPGQSPDWP 591


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 203 IAHRDIKSKNILVKRNG 253
           I +RD+K  N+L+ ++G
Sbjct: 106 IVYRDLKLDNVLLDQDG 122


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 203 IAHRDIKSKNILV 241
           + HRD+K +N+L+
Sbjct: 30  VVHRDLKPENLLL 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,599
Number of Sequences: 438
Number of extensions: 1776
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)