Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060475.seq
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   2.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   3.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   3.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   3.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   3.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   3.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   3.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   3.8  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   5.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   8.7  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   8.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.7  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   8.7  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   8.7  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   8.7  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 360 LLLFRRQVENCFLVGGMRLQYVSLYVEVLPADQRLADPSSRARSVSSTPKQ 208
           LL+F +Q+  CF V  +RL+   L        +R+ +  ++  SV    KQ
Sbjct: 181 LLIFVQQIPFCFFVRVIRLKIEDLNGAFRAGLERVQNGENQWISVMKVNKQ 231


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 395 WSWSLWSASRCW 430
           W W LW  S+ W
Sbjct: 465 WIWLLWLLSQTW 476


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 395 WSWSLWSASRCW 430
           W W LW  S+ W
Sbjct: 465 WIWLLWLLSQTW 476


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 395 WSWSLWSASRCW 430
           W W LW  S+ W
Sbjct: 465 WIWLLWLLSQTW 476


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 395 WSWSLWSASRCW 430
           W W LW  S+ W
Sbjct: 465 WIWLLWLLSQTW 476


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 ADQRLADPSSRARSVSSTPK 211
           A Q L+ P+S   S SST K
Sbjct: 162 ASQNLSSPASSTSSTSSTEK 181


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 ADQRLADPSSRARSVSSTPK 211
           A Q L+ P+S   S SST K
Sbjct: 162 ASQNLSSPASSTSSTSSTEK 181


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 ADQRLADPSSRARSVSSTPK 211
           A Q L+ P+S   S SST K
Sbjct: 162 ASQNLSSPASSTSSTSSTEK 181


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 ADQRLADPSSRARSVSSTPK 211
           A Q L+ P+S   S SST K
Sbjct: 162 ASQNLSSPASSTSSTSSTEK 181


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 ADQRLADPSSRARSVSSTPK 211
           A Q L+ P+S   S SST K
Sbjct: 118 ASQNLSSPASSTSSTSSTEK 137


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 ADQRLADPSSRARSVSSTPK 211
           A Q L+ P+S   S SST K
Sbjct: 162 ASQNLSSPASSTSSTSSTEK 181


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 ADQRLADPSSRARSVSSTPK 211
           A Q L+ P+S   S SST K
Sbjct: 162 ASQNLSSPASSTSSTSSTEK 181


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 216 VSMIHCALSNSDPRDVDLLG 275
           +  ++  LSN +  DVDL+G
Sbjct: 144 IDFLYHVLSNENALDVDLIG 163


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +2

Query: 395 WSWSLWSASRCW 430
           W W +W  S+ W
Sbjct: 219 WIWLVWLLSQAW 230


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +2

Query: 395 WSWSLWSASRCW 430
           W W +W  S+ W
Sbjct: 452 WIWLVWLLSQAW 463


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +2

Query: 395 WSWSLWSASRCW 430
           W W +W  S+ W
Sbjct: 452 WIWLVWLLSQAW 463


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 93  PFSPPYDTSTSFMILAWRRGSNISDWDSLV 4
           P   P      +  L  R GSN + W+SL+
Sbjct: 80  PVIDPAKDPAIYSNLLPRPGSNDNSWESLI 109


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 293 LCMSRFSQQINVSR 252
           LC+ RFSQ  N++R
Sbjct: 110 LCLLRFSQSGNLNR 123


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 293 LCMSRFSQQINVSR 252
           LC+ RFSQ  N++R
Sbjct: 366 LCLLRFSQSGNLNR 379


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/43 (23%), Positives = 15/43 (34%)
 Frame = -1

Query: 625 CLVLVCSKASMS*DCRFPVVSCIDGSHFVRRNRHPSKPRRTAS 497
           C +  C    M  +C  P V C       +  +   KP  T +
Sbjct: 243 CRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKPNSTTN 285


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 133 LQGFRSQLYSLIETV 89
           LQ  ++Q+YSL ETV
Sbjct: 178 LQVIKAQIYSLRETV 192


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 133 LQGFRSQLYSLIETV 89
           LQ  ++Q+YSL ETV
Sbjct: 178 LQVIKAQIYSLRETV 192


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 133 LQGFRSQLYSLIETV 89
           LQ  ++Q+YSL ETV
Sbjct: 498 LQVIKAQIYSLRETV 512


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,722
Number of Sequences: 336
Number of extensions: 3313
Number of successful extensions: 26
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)