Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060475.seq
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1085 - 23851852-23853165 147 8e-36
03_05_0830 + 28034179-28035492 145 2e-35
01_07_0127 + 41234826-41236136 145 3e-35
02_03_0333 + 17843605-17843661,17843713-17843881,17845606-178457... 31 1.0
09_02_0036 + 3217163-3217584,3217752-3218322 29 2.4
03_04_0223 + 18892459-18892765,18892976-18893652 29 4.2
04_03_0513 - 16681227-16683936,16685572-16685966 28 5.5
01_07_0218 + 42073425-42073561,42073714-42073743,42073957-420741... 28 5.5
12_02_0043 + 12762257-12762678,12762751-12762778 28 7.3
10_01_0338 + 3717089-3717205,3717725-3718297 28 7.3
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 28 7.3
12_02_0735 - 22636835-22639502,22639755-22640734 27 9.7
04_01_0280 - 3757107-3758180 27 9.7
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 27 9.7
01_07_0059 + 40805196-40805381,40805593-40805925 27 9.7
>07_03_1085 - 23851852-23853165
Length = 437
Score = 147 bits (356), Expect = 8e-36
Identities = 69/83 (83%), Positives = 77/83 (92%)
Frame = +2
Query: 5 TRLSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDE 184
T LSQSDMFD RLQAKI+ +VDVSYGGENGFNQAIEL+AE L NVKFIQEKKLIG+YF+E
Sbjct: 235 TELSQSDMFDQRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKKLIGKYFEE 294
Query: 185 ISQDTGKYCFGVDDTLRALELGS 253
ISQDTGKY FGVDDTL+ALE+G+
Sbjct: 295 ISQDTGKYVFGVDDTLKALEMGA 317
Score = 88.6 bits (210), Expect = 4e-18
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 ETLICWENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGVELELVECQPLLEW 435
ETLI WENL+ RYVLK+ A+ + I H EQE D+S+F D S ELE+ E LLEW
Sbjct: 319 ETLIVWENLETNRYVLKNSASGETVIKHFNKEQEADQSNFRDPASNAELEVQEKMSLLEW 378
Query: 436 LANNYKSFGATLESSRTRAR-GKQF 507
AN YK FG +LE +++ G QF
Sbjct: 379 FANEYKKFGCSLEFVTNKSQEGSQF 403
>03_05_0830 + 28034179-28035492
Length = 437
Score = 145 bits (352), Expect = 2e-35
Identities = 68/83 (81%), Positives = 76/83 (91%)
Frame = +2
Query: 5 TRLSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDE 184
T LSQSDMFD RLQAKI+ +VDVSYGGENGFNQAIEL+AE L NVKFIQEKKLIG+YF+E
Sbjct: 235 TELSQSDMFDQRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKKLIGKYFEE 294
Query: 185 ISQDTGKYCFGVDDTLRALELGS 253
ISQDTGKY FGVDDTL+ LE+G+
Sbjct: 295 ISQDTGKYVFGVDDTLKTLEMGA 317
Score = 94.3 bits (224), Expect = 7e-20
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 ETLICWENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGVELELVECQPLLEW 435
ETLI WENLD+ RYVLK+ AT + I HL EQE D+S+F D + ELE+ + LLEW
Sbjct: 319 ETLIVWENLDVNRYVLKNSATGETAIKHLNKEQEADQSNFRDTSTNAELEVQDKTSLLEW 378
Query: 436 LANNYKSFGATLESSRTRAR-GKQF 507
AN YK FG TLE +++ G QF
Sbjct: 379 FANEYKKFGCTLEFVTNKSQEGSQF 403
>01_07_0127 + 41234826-41236136
Length = 436
Score = 145 bits (351), Expect = 3e-35
Identities = 67/83 (80%), Positives = 76/83 (91%)
Frame = +2
Query: 5 TRLSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDE 184
T LSQSDMFD RLQAKI+K+VDVSYGGENGFNQAIE++AE L NVKFIQEKKLIG+YF+E
Sbjct: 235 TELSQSDMFDQRLQAKILKVVDVSYGGENGFNQAIEISAEELSNVKFIQEKKLIGKYFEE 294
Query: 185 ISQDTGKYCFGVDDTLRALELGS 253
ISQDTGKY F VDDT+ ALE+G+
Sbjct: 295 ISQDTGKYVFSVDDTMSALEMGA 317
Score = 95.5 bits (227), Expect = 3e-20
Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 ETLICWENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGVELELVECQPLLEW 435
ETLI WENLDI RYVLK+ T + T+ HL QE D+S+F DK + ELE++E LLEW
Sbjct: 319 ETLIVWENLDINRYVLKNSVTGETTVKHLNKAQETDQSNFRDKATSAELEVIEKTLLLEW 378
Query: 436 LANNYKSFGATLESSRTRAR-GKQFV 510
A NY+ FG +LE +++ G QFV
Sbjct: 379 FAENYRQFGCSLEFVTNKSQEGSQFV 404
>02_03_0333 +
17843605-17843661,17843713-17843881,17845606-17845723,
17845725-17846358,17846457-17846526,17847680-17847804,
17848146-17848270,17848638-17848730,17849714-17849753
Length = 476
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 331 ILHLTPEQ--EKDKSHFTDKESGVELELVECQP 423
+LH +PE ++D HF K+SG LEL+ +P
Sbjct: 198 LLHESPESILQQDDLHFIQKDSGETLELLSIEP 230
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 331 ILHLTPEQ--EKDKSHFTDKESGVELELVECQP 423
+LH +PE E+D HF K+SG LEL +P
Sbjct: 169 LLHESPESTLEQDDLHFIQKDSGETLELHSKEP 201
>03_04_0223 + 18892459-18892765,18892976-18893652
Length = 327
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 331 ILHLTPEQ--EKDKSHFTDKESGVELELVECQP 423
+LH +PE E+D HF K+SG +EL +P
Sbjct: 227 LLHESPESIIEQDDLHFIQKDSGKTVELQSKEP 259
>04_03_0513 - 16681227-16683936,16685572-16685966
Length = 1034
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -2
Query: 135 FCKDSAASSIA*LK--PFSPPYDTSTSFMILAWRRGSNISDWDSL 7
+C+ AS++ L+ FSP D++ + + +WR G++ DW+ +
Sbjct: 47 YCQPDQASALLRLRRRSFSPTNDSACT--LASWRPGTDCCDWEGV 89
>01_07_0218 +
42073425-42073561,42073714-42073743,42073957-42074137,
42074742-42074806,42075374-42075545,42076570-42076769,
42076872-42076944,42077150-42077401
Length = 369
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/83 (19%), Positives = 39/83 (46%)
Frame = +1
Query: 229 TARSRTRIRETLICWENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGVELEL 408
+ R+ I C + + + +L+ T E+ +P Q KS ++ ++ E
Sbjct: 167 SVRTEGPITICAFCPQPREWKEIILRRGKTALESEKDQSPHQAVVKSEKDQSQAAMKSEK 226
Query: 409 VECQPLLEWLANNYKSFGATLES 477
+ + L++++ NY+ + A ++S
Sbjct: 227 ADTEKLIQFMEANYEKYVANVDS 249
>12_02_0043 + 12762257-12762678,12762751-12762778
Length = 149
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 331 ILHLTPEQ--EKDKSHFTDKESGVELELVECQP 423
+LH +PE E+D HF ++SG LEL +P
Sbjct: 4 LLHESPESILEQDDLHFIQEDSGETLELHSKEP 36
>10_01_0338 + 3717089-3717205,3717725-3718297
Length = 229
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 331 ILHLTPEQ--EKDKSHFTDKESGVELELVECQP 423
+LH +PE E D HF K+SG LEL +P
Sbjct: 123 LLHESPESTLEHDDLHFIRKDSGETLELHSKEP 155
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 185 ISQDTGKYCFGVDDTLRALE 244
+ +D G YCF +D+ LR +E
Sbjct: 372 LPEDQGDYCFDIDEMLRMME 391
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 463 ATLESSRTR-ARGKQFVAASRDGGSSVQSDF 552
ATL+ S R + G +++ ASRDGG+ ++F
Sbjct: 49 ATLQVSPVRRSGGSRYLGASRDGGADESAEF 79
>04_01_0280 - 3757107-3758180
Length = 357
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 331 ILHLTPEQ--EKDKSHFTDKESGVELELVECQP 423
+LH +PE E D HF K+SG EL +P
Sbjct: 297 LLHESPESILEHDDLHFVQKDSGKTFELHSKEP 329
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 56 IKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGKYCFGVDDTL 232
I L DV + N AIE + +L N+ + E ++ R DE +D + +DD+L
Sbjct: 376 IMLEDVGLQEADAENAAIESPSVALDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSL 434
>01_07_0059 + 40805196-40805381,40805593-40805925
Length = 172
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 473 SHHGQEPEGSSSSRLRGMAVPPYKVTSIDAAHDRKS 580
+HHG P SSSS P ++ D A R S
Sbjct: 123 THHGHHPAYSSSSSFAPSFAPAVRIQGFDVAACRSS 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,279,085
Number of Sequences: 37544
Number of extensions: 417505
Number of successful extensions: 1206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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