Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060475.seq
(646 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_9092| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_13788| Best HMM Match : rve (HMM E-Value=0.00016) 29 3.2
SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4) 29 4.3
SB_16005| Best HMM Match : bZIP_Maf (HMM E-Value=5.6e-32) 29 4.3
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06) 28 5.7
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 28 5.7
SB_22006| Best HMM Match : DUF1489 (HMM E-Value=6.4) 28 5.7
SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086) 28 7.5
SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38) 28 7.5
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07) 27 9.9
SB_3668| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1164
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/42 (69%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +1
Query: 385 ESGVELELVECQPLLEWLANNYKSFGATLESSRTRAR-GKQF 507
ESGVELELV+ PLLEWLANNYK+FGATLE +++ G QF
Sbjct: 1074 ESGVELELVDKNPLLEWLANNYKNFGATLEIITDKSQEGAQF 1115
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 95 FNQAIELAAESLQNVKFIQEKKLIGRY 175
F+QAIELA+E L NVKFIQEKKLIG+Y
Sbjct: 1019 FDQAIELASEVLANVKFIQEKKLIGKY 1045
>SB_9092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 90 FSP-PYDTSTSFMILAWRRGSNISDWDSL 7
FSP Y +F+ L W+ SN DWD L
Sbjct: 592 FSPVEYVLDRNFLDLRWKAPSNAKDWDGL 620
>SB_13788| Best HMM Match : rve (HMM E-Value=0.00016)
Length = 508
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 554 WKSLCTEEPPSLEAATNCFPLALVRDDSKV 465
W S CT++PPS EAA P + + + +V
Sbjct: 76 WSSRCTKKPPSKEAAKKKKPTRVTKREVQV 105
>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
Length = 402
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 183 RSHRT-QESIASVSMIHCALSNSDPRDVDLLGEPRHTKIRIEVACHQPGNNSPPDA*TRE 359
R+HRT QE++ S + + A + PR D T +R+ C + G P D R
Sbjct: 231 RAHRTPQEALTSATEV--AFTFISPRSFD--HSKTRTHVRLLGPCFKTGRMRPYDRQRRG 286
Query: 360 GQITFHRQRER 392
+ HR R+R
Sbjct: 287 CIVRNHRPRDR 297
>SB_16005| Best HMM Match : bZIP_Maf (HMM E-Value=5.6e-32)
Length = 160
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 70 RIIWRRKRFQS-GYRAGCGILAECQVYTGEETNWTLL**DLTGHRKVL 210
RI +RR+ ++ GY C I Q + EETNW L+ DL RK L
Sbjct: 86 RIKYRRRTLKNRGYAHNCRIKRISQKKSLEETNWELV-QDLENLRKEL 132
>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
Length = 1532
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 265 ICWENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGVELELVECQPLLEWLAN 444
I W+ +DI++ + + + + P+ K+ F + + ++ + EC PLLE +AN
Sbjct: 375 ILWQEIDIEK--INQELLDFQNRIRKLPKGLKEWQAFLELKKTID-DFSECCPLLEMMAN 431
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 183 RSHRT-QESIASVSMIHCALSNSDPRDVDLLGEPRHTKIRIEVACHQPGNNSPPDA*TRE 359
R+HRT QE++ S + + A + PR D T +R+ C + G P D R
Sbjct: 244 RAHRTPQEALTSATEV--AFTFITPRSFD--HSKTRTHVRLLGPCFKTGRMRPYDRQRRG 299
Query: 360 GQITFHRQRER 392
+ HR R+R
Sbjct: 300 CIVRNHRPRDR 310
>SB_22006| Best HMM Match : DUF1489 (HMM E-Value=6.4)
Length = 276
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 265 ICWENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGVELELVECQPLLEWLAN 444
I W+ +DI++ + + + + P+ K+ F + + ++ + EC PLLE +AN
Sbjct: 176 ILWQEIDIEK--INQELLDFQNRIRKLPKGLKEWQAFLELKKTID-DFSECCPLLEMMAN 232
>SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)
Length = 502
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 55 HKTGGRIIWRRKRFQSGYRAGCGILAECQVYTGEETNW 168
+KT RII + + QSG R G + E QV TG+ +
Sbjct: 244 YKTNSRIIDKNQSLQSGERKGLEYVTEIQV-TGQSPRY 280
>SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)
Length = 362
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 226 YTARSRTRIRETLICWENLDIQRY----VLKSHATNQETILHLTPEQEK 360
Y R +R+ CW+ + Q+Y V SH T ++ L LTP QE+
Sbjct: 303 YKTDFRNAVRKFCCCWKPPN-QQYSTNGVESSHITRVDSSLELTPPQEQ 350
>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 628 HCLVLVCSKASMS*DCRFPVVSCIDGSHFVRRNRHPSKPRRTASLWLLSVMTLRW 464
+CL L K S + + PV+ I G F+R + H P A+ + V+T+ +
Sbjct: 100 NCLTLNVYKPSATRNSSLPVLVFIHGGAFMRFSAHEDDPSLLATEQGIMVVTINY 154
>SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 459 WCHLRVITDKSQ-REAVRRGFEGWRFLRTK*LPSMQLTTGNRQSYDIDA 602
W R++ ++ Q + +EGWR L + +P LT + Y + A
Sbjct: 22 WAPYRLLEEERQFASGLCMDWEGWRMLNEEAIPRRSLTLAQKLLYAVPA 70
>SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)
Length = 379
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +2
Query: 353 KRRTNHISPTKRAEWSWSLWS--ASRCWSGWPITTSRLVPP*SHHGQEPEGS 502
+RR SP WS W +S C G I T R+ P S G P S
Sbjct: 26 RRRRRSCSPRNCDVSQWSSWGDCSSHCGGGTQIRTRRITTPASCGGGCPSYS 77
>SB_3668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 282 EVLPADQRLADPSSRARSVSSTPKQYFPVSCEISSK*RPISFFSCINL 139
E+ +DQ ++ R V+ TP++ P EIS + P C+N+
Sbjct: 15 EIKTSDQMISKDDER--QVTETPREETPNETEISKEGTPAEKEKCVNI 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,713,053
Number of Sequences: 59808
Number of extensions: 453258
Number of successful extensions: 1539
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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