Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060475.seq
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical...   140   1e-33
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z73972-3|CAA98259.1|  305|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81579-8|CAN86617.1|  930|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81579-7|CAB61019.1|  927|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF016852-1|AAB94551.1|  927|Caenorhabditis elegans HMP-1 protein.      28   6.5  
U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical
           protein T05H4.6 protein.
          Length = 443

 Score =  140 bits (338), Expect = 1e-33
 Identities = 66/83 (79%), Positives = 74/83 (89%)
 Frame = +2

Query: 5   TRLSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDE 184
           T L QSDMFD RLQAK+IK VD++YGGENGFNQAIELAA++L +VKFIQEKKLIG YFDE
Sbjct: 242 TELGQSDMFDQRLQAKMIKTVDIAYGGENGFNQAIELAADTLASVKFIQEKKLIGGYFDE 301

Query: 185 ISQDTGKYCFGVDDTLRALELGS 253
           ISQDTGKY FGV DTL ALE+G+
Sbjct: 302 ISQDTGKYVFGVKDTLAALEMGA 324



 Score =  110 bits (265), Expect = 7e-25
 Identities = 54/114 (47%), Positives = 76/114 (66%), Gaps = 3/114 (2%)
 Frame = +1

Query: 256 ETLICWENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGVELELVECQPLLEW 435
           ETLICWENLDI RY +K+ +  ++ +L+L P++EKDKSHFTD E+G ++E++E  PLLEW
Sbjct: 326 ETLICWENLDIVRYKMKN-SLGEDILLNLRPDEEKDKSHFTDSETGQDMEIIETMPLLEW 384

Query: 436 LANNYKSFGATLESSRTRAR-GKQFVAASRDGGSSV--QSDFHRCSSRQEIDNL 588
            ANNYK+FGA LE    +++ G QFV      G  +  + D        E+DN+
Sbjct: 385 FANNYKNFGAALEIVTDKSQEGAQFVRGFGGIGGLLRYRVDLAHVDLEDELDNI 438


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
           protein T28C6.9 protein.
          Length = 1861

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 24/111 (21%), Positives = 52/111 (46%)
 Frame = +1

Query: 313 ATNQETILHLTPEQEKDKSHFTDKESGVELELVECQPLLEWLANNYKSFGATLESSRTRA 492
           AT++E  LH+   QE  +   +  E   E+E ++ + + E      ++F +  E+ R  A
Sbjct: 444 ATSRELELHVLMVQEMTEQIASMHEKNDEMEKLKVEQMKELEKWKSEAFTSKQEAQRVHA 503

Query: 493 RGKQFVAASRDGGSSVQSDFHRCSSRQEIDNLTTSTLYCTLRRDNAPFKAR 645
             ++ + A  +   + +S+F + ++  + +    S      RRD A  +A+
Sbjct: 504 EVQRLLHALSESELARKSEFEQATTAHDAEIREFSIKMEDARRDIADLEAK 554


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
           protein C09F9.2 protein.
          Length = 1642

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 397 ELELVECQPLLEWLANNYKSFGATLESSRTRARGKQFVAASRDGGSSVQSDFHRCSSRQE 576
           E+E V   P   W+A  +KS  AT + S     G+     S    S++ S     +SR++
Sbjct: 253 EIEFVLRYPGQSWIAVGWKSPEATCDLSAGDFAGRNVATTSSSPSSTISSIITNATSREQ 312

Query: 577 ID 582
            D
Sbjct: 313 ND 314


>Z73972-3|CAA98259.1|  305|Caenorhabditis elegans Hypothetical
           protein F15H10.6 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +2

Query: 101 QAIELAAESLQNVKFIQEK--KLIGRYFDEISQDTGK 205
           + I  A E L++VK   EK   LIG++F+E+ +D GK
Sbjct: 123 KGIAKAMEKLEHVKTPMEKTKSLIGKFFNEMWKDVGK 159


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 274 ENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGVELELVECQPLLE 432
           E+   + +   S+A   ET+  ++PE  K K H  DK++    +LV  +  +E
Sbjct: 668 EDTSQKEHCAHSNAITPETVFDISPELGKSKQHCIDKQAEYSGKLVHLKNHIE 720


>AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical
           protein K08D9.6 protein.
          Length = 530

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 445 NYKSFGATLESSRTRARGKQFVAASRDGGSSVQSDFHRCSSRQ 573
           N+K   +TLESS T  RGK  V   R   + +   +H  + R+
Sbjct: 342 NFKEIVSTLESSDTVKRGKVVVKPERYNSTWIHYSWHDANRRE 384


>Z81579-8|CAN86617.1|  930|Caenorhabditis elegans Hypothetical
           protein R13H4.4b protein.
          Length = 930

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 213 SVSMIHCALSNSDPRDVDLLGE 278
           S ++  C ++NSDPR +DLL E
Sbjct: 66  SFAISKCPIANSDPRAIDLLHE 87


>Z81579-7|CAB61019.1|  927|Caenorhabditis elegans Hypothetical
           protein R13H4.4a protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 213 SVSMIHCALSNSDPRDVDLLGE 278
           S ++  C ++NSDPR +DLL E
Sbjct: 66  SFAISKCPIANSDPRAIDLLHE 87


>Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical
           protein F32D8.8 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 145 KLDILQGFRSQLYSLIETVFAS--I*YVHQFYDLGLETRIKHIGLGQ 11
           KLDI + FR ++YS+    FA     Y   F      + I++IGLGQ
Sbjct: 230 KLDIEERFRDRVYSITPVEFAMNFKNYSESFDFAAAFSSIEYIGLGQ 276


>AF016852-1|AAB94551.1|  927|Caenorhabditis elegans HMP-1 protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 213 SVSMIHCALSNSDPRDVDLLGE 278
           S ++  C ++NSDPR +DLL E
Sbjct: 66  SFAISKCPIANSDPRAIDLLHE 87


>U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK1290.9 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 265 ICWENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGV 396
           I   + D+  Y+L  + TN+E  L    E  K  + FT +  G+
Sbjct: 159 IILNSFDVHHYLLARNGTNEEQFLDHLIEIIKSSNKFTTRSFGI 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,724,312
Number of Sequences: 27780
Number of extensions: 330781
Number of successful extensions: 1012
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)