Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060475.seq
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.83 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.83 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 62  LVDVSYGGENGFNQAIELAAESL 130
           ++D SYGG  GF  A+ L ++ L
Sbjct: 660 IIDHSYGGGFGFGSAVLLISDRL 682


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 62  LVDVSYGGENGFNQAIELAAESL 130
           ++D SYGG  GF  A+ L ++ L
Sbjct: 698 IIDHSYGGGFGFGSAVLLISDRL 720


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 626 LSRLSVQ*SVDVVRLSISCRELHRWKSLCTEEPP-SLEAAT 507
           +S+L +Q   +  RL+     LH  K + + EPP S E++T
Sbjct: 323 VSQLEIQLQKERDRLTAMMHHLHVAKQMASPEPPKSSESST 363


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +1

Query: 424 LLEWLANNYKSFGATLESSRTRARGKQFVAASRDGGSSVQSDF 552
           LLE+ A NY  +GA  +    +         S   GS   S F
Sbjct: 319 LLEYAAVNYTYWGARAKKKSKKKESDDKKVISSKSGSKANSPF 361


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 253 RETLICWENLDIQRYVLKSHATNQET 330
           + TLI ++N D   + L SH  N  +
Sbjct: 208 KNTLIIYQNADDSFHRLSSHTLNHNS 233


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 315 GMRLQYVSLYVEVLPADQRLADPSS 241
           G+ LQ  +LY + +P D RL++ +S
Sbjct: 531 GIILQAPTLYDDRIPIDVRLSEIAS 555


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,910
Number of Sequences: 438
Number of extensions: 4224
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)