Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060474.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    69   5e-13
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    35   0.010
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    34   0.017
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    30   0.36 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   7.8  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 34/76 (44%), Positives = 49/76 (64%)
 Frame = +2

Query: 257 DDNDQNYVAAESALDRMCCGLGGKIMLGLIVGQVPVMLQSEDWXXRHAALMAVSSAGEGC 436
           D++D N+V AE A+DR+   LGGK +L      +P ++ S+ W  RHAALMA+SS  EG 
Sbjct: 343 DESDANHVVAEQAMDRLSRKLGGKTILPPSFTWLPRLIPSQKWSERHAALMAISSIAEGA 402

Query: 437 HKQMEQMLDQVVTAVL 484
            K M++ L +V+  VL
Sbjct: 403 EKLMKKELSRVLDMVL 418



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = +3

Query: 12  KFLRPQLETIFQVCIKVVGDKDAEDNWRQLALEAMVTLCETAPAMVRKQVPNAVSMLTPL 191
           K  +P  E++    + ++ DK+ +++ RQ ALE +V   E APAM RK   +    L   
Sbjct: 254 KLFKPIFESVIAFGLGIIKDKELDNSARQAALELLVCFSEGAPAMCRKS-SDYTDQLVLQ 312

Query: 192 VLEMMCELDEEPD 230
            L +M ++  +P+
Sbjct: 313 CLLLMTDVAGDPE 325



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 356 VPVMLQSEDWXXRHAALMAVSSAGEGCHKQMEQMLDQVVTAVL 484
           VPV+   E     HAA   V+ + E  +K +E  LD ++  +L
Sbjct: 460 VPVLESPESRVQAHAAAAMVNFSEEADNKVLEPYLDDILQRLL 502


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 332 MLGLIVGQVPVMLQSEDWXXRHAALMAVSSAGEGCHKQMEQMLDQV 469
           +L +I+  +   L SEDW  + A ++AV +  EGC   M Q L ++
Sbjct: 411 LLEIILPHLKQSLTSEDWKVQEAGVLAVGAIAEGCMDGMVQYLPEL 456


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +2

Query: 257 DDNDQNYVAAESALDRMCCGLGGKIMLGLIVGQVPVMLQSEDWXXRHAALMAVSSAGEGC 436
           D++D N   A +   ++   + G +++  ++  V   +Q+ DW  R AA+MA  S  EG 
Sbjct: 338 DEDDWNISMAAATCLQLFAQVVGDLIVNPVLAFVEQNIQNPDWHQREAAVMAFGSVLEGP 397

Query: 437 HKQMEQMLDQVVTAVLI 487
           +  M   L      VLI
Sbjct: 398 NVAMLTPLVNQALPVLI 414


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 9   AKFLRPQLETIFQVCIKVV-GDKDAEDNWRQLALEAMVTLCETAPAMVRKQVPNAVSML 182
           A F   QLE IFQV +K++ G  + E  +     E + +L     A++   +PNA   L
Sbjct: 86  APFTLSQLEDIFQVILKILSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFL 144


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
 Frame = +3

Query: 99  LALEAMVTLCETAPAMVRKQVPNAVSMLTPL---------VLEMMCELDEEPD 230
           +++ +++  C   P  +RKQ+P  +  L+ L         +LE +C L   PD
Sbjct: 807 VSIHSLMLCCYELPVSIRKQLPAILVTLSRLITKPDLSVHILEFLCSLARLPD 859


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,453
Number of Sequences: 5004
Number of extensions: 57096
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)