Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060474.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 56 2e-08
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 56 3e-08
12_01_0247 - 1836971-1837810 31 0.86
11_06_0380 + 22937941-22937984,22939375-22941481 29 3.5
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129... 28 6.0
07_03_1296 + 25583195-25584385 28 6.0
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821... 28 8.0
01_03_0018 - 11686420-11687460 28 8.0
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 272 NYVAAESALDRMCCGLGGKIMLGLIVGQVPVMLQSEDWXXRHAALMAVSSAGEGCHKQME 451
NY A+ LDR+ +GG ++ + +P L + +W HAAL+ ++ EGC K M
Sbjct: 362 NYGVAQECLDRLAIAIGGNAIVPIASELLPQYLSAPEWQKHHAALITLAQIAEGCAKVML 421
Query: 452 QMLDQVVTAVL 484
+ L+QVV+ +L
Sbjct: 422 KNLEQVVSMIL 432
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 ARAKFLRPQLETIFQVCIKVVGDKDAEDNWRQLALEAMVTLCET---APAMVRKQVPNAV 173
A +FLR Q+ + +++ ED R LA+E ++TL E AP M+R+ +P V
Sbjct: 269 AEPRFLRRQIADVVGAMLQIAEAAQLEDGTRHLAVEFVITLAEARERAPGMMRR-LPQFV 327
Query: 174 SMLTPLVLEMMCELDEEPDW 233
L ++++M+ +++++P W
Sbjct: 328 GRLFAVLMQMLLDVEDDPAW 347
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/72 (36%), Positives = 40/72 (55%)
Frame = +2
Query: 272 NYVAAESALDRMCCGLGGKIMLGLIVGQVPVMLQSEDWXXRHAALMAVSSAGEGCHKQME 451
+YV A+ LDR+ +GG +L + +P SE+W RHAAL+ ++ EGC + M
Sbjct: 352 SYVFAQECLDRLAIAVGGNTILPVAAELLPSFFASEEWKRRHAALVTIAQIAEGCARVMI 411
Query: 452 QMLDQVVTAVLI 487
+ L+Q A I
Sbjct: 412 KNLEQAHAASAI 423
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 ARAKFLRPQLETIFQVCIKVVGDKDAEDNWRQLALEAMVTLCET---APAMVRKQVPNAV 173
A +FLR QL + +++ ED R LA+E +VTL E AP M+RK +P V
Sbjct: 259 AEPRFLRRQLPDVVGSMLQIAEAPGLEDGTRHLAVEFVVTLAEARERAPGMMRK-LPRYV 317
Query: 174 SMLTPLVLEMMCELDEEPDW 233
L +++ M+ ++ +EP W
Sbjct: 318 GRLFAVLMTMLLDVQDEPAW 337
>12_01_0247 - 1836971-1837810
Length = 279
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 147 PWLVLSHIMLPSLQVPVGAS--YLQHLCPQPPLCKLGIW 37
PWL+++HI SL V AS + +LC P C + +W
Sbjct: 73 PWLLMTHIPSQSLPDSVAASGCKVVYLCRDPKDCFVSLW 111
>11_06_0380 + 22937941-22937984,22939375-22941481
Length = 716
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 21 RPQLETIFQVCIKVVGDKDAEDNWRQLALEAMVTLCETA 137
RP L T +VC++++ +A D W +A LC A
Sbjct: 630 RPALTTARKVCVELLNIPEARDRWELIAAVWTEILCYMA 668
>07_03_1502 +
27010328-27010509,27010715-27010973,27011989-27012975,
27013388-27013822
Length = 620
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 39 IFQVCIKVVGDKDAEDNWRQLALEAMVTLCETAPAM-VRK----QVPNAVSMLTPLVLEM 203
I +C+ VG ++L++ ++ + T P V K + NA+S+L+PLV+
Sbjct: 89 IVVICLNNVGLFLPSTKSKELSVSILMLVAATLPFPGVHKLKGGPLRNAISLLSPLVVMT 148
Query: 204 MCELDEEPDWTIQDNTAMTIM 266
+ L + WT Q++ + ++
Sbjct: 149 VTTLIQMLGWTNQEDNQIRLL 169
>07_03_1296 + 25583195-25584385
Length = 396
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -3
Query: 402 AAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSNADSAAT*FWSLSS*QCCPVWSSQ 226
AA R Q + +++ + +P++ PP P + +AA FW+ CC V+ Q
Sbjct: 108 AALRCVQEAFAHLSDSSANPAPALAPPPAPASGGDASAAAADAFWTACP-YCCHVYQYQ 165
>08_02_0952 -
22981116-22981268,22981930-22981974,22982052-22982153,
22983262-22983468,22984783-22985042,22985338-22985442,
22986244-22986247,22986877-22986962,22987022-22987064
Length = 334
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 245 VLYGPVRLFI--KLTHHLKYKWSEHAHGIGHLFTHH 144
VL+G V FI K+ +++ + AHG+GH HH
Sbjct: 78 VLFGIVFFFIVEKIVRYVEDNSQKGAHGMGHHHHHH 113
>01_03_0018 - 11686420-11687460
Length = 346
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 150 APWLVLSHIMLPSL--QVPVGASYLQHLCPQPPLCKLGIW 37
AP L+ +HI PSL V + + ++C P C + +W
Sbjct: 144 APRLLATHIPRPSLPASVAISGCKVVYMCRDPKDCLVSLW 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,541,719
Number of Sequences: 37544
Number of extensions: 434895
Number of successful extensions: 1066
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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