Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060474.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     50   1e-06
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_3115| Best HMM Match : AAA (HMM E-Value=0)                          29   3.5  
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)                28   8.1  
SB_28023| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-37)                 28   8.1  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +2

Query: 380 DWXXRHAALMAVSSAGEGCHKQMEQMLDQVVTAVL 484
           DW  RHA LMA+S+ GEGC KQME +L  V   VL
Sbjct: 429 DWRYRHAGLMAISAVGEGCQKQMEALLQSVTDTVL 463



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/78 (33%), Positives = 42/78 (53%)
 Frame = +3

Query: 12  KFLRPQLETIFQVCIKVVGDKDAEDNWRQLALEAMVTLCETAPAMVRKQVPNAVSMLTPL 191
           K LR  LE +  + + +V + +  +NWR L++E +VTL ET P +               
Sbjct: 219 KLLRSNLEPLLNLMLDIVRNAELGENWRHLSVECIVTLAETVPQL--------------- 263

Query: 192 VLEMMCELDEEPDWTIQD 245
            L MM +LD++P+W+I D
Sbjct: 264 -LAMMVDLDDDPEWSISD 280



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +2

Query: 257 DDNDQNYVAAESALDRMCCGLGGKIMLGLIVGQVPVMLQS 376
           +D + N V  ES+LDR+ C LGGK +L  I   +P ML +
Sbjct: 285 EDYESNTVVGESSLDRLACALGGKTILPHITATIPQMLNN 324


>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +3

Query: 30  LETIFQVCIKVVGDKDAEDNWRQLALEAMVTL----CETAPAMVRKQVPNAVSMLTPLVL 197
           L+ I Q  + ++  K  E+  +   LE +++      E A   V     N +S +T  V+
Sbjct: 201 LKYILQGTLDILKIKRKEEKKKNKLLEEIISKVKIDAEEAKGKVATAGENLISFITENVV 260

Query: 198 EMMCELDEEPDWTIQDNT 251
           E+M E+D E D  I+  T
Sbjct: 261 ELMAEIDNEVDQVIRKKT 278


>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
          Length = 913

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 254 YDDNDQNYVAAESALDRMCCGLGGKIMLGLIVGQV 358
           Y  +DQ     E   DRMC  LGG+   G I  ++
Sbjct: 481 YLPSDQKLYTTEQLFDRMCMALGGRAAEGKIFRRI 515


>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 366 ITGTCPTISPSIILPPRPQHMRSNADSAAT*FWSLSS*QCC 244
           + GTCPT  P    PP P +     D   T  +     +CC
Sbjct: 732 VPGTCPTFPPPAECPPEPDN-ECETDVQCTTLYPGQGLKCC 771


>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 483

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 510 YVCSLQCSRAXSTDLHSVEKIPQXSXXDF*WADD 611
           +VCS+ CS+    DL  + KI       F W +D
Sbjct: 151 HVCSVNCSKYKGEDLKQLRKIYNGYHCKFDWFND 184


>SB_28023| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-37)
          Length = 347

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -1

Query: 245 VLYGPVRLFIKLTHHLKYKWSEHAHGIGHLFTHHGWCCLT*CYHRFKCQLAPVIFSIFVP 66
           + YGP+ L I +  +  +KW  +    GH F    W  ++  +      + P+I  I+  
Sbjct: 252 ICYGPLNLVIVMMQNFVFKWKRNP---GHEFQQ--WYFVSQLFSFLNAAINPII-CIYFN 305

Query: 65  NHLYANL 45
            +LY +L
Sbjct: 306 RNLYQSL 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,057,279
Number of Sequences: 59808
Number of extensions: 478291
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)