Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060474.seq
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 73 3e-13
L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease pr... 31 0.77
L29439-1|AAA98751.1| 658|Caenorhabditis elegans endoprotease pr... 31 0.77
L29438-1|AAA98750.1| 684|Caenorhabditis elegans endoprotease pr... 31 0.77
AF039719-6|AAO12410.1| 666|Caenorhabditis elegans Blistered cut... 31 0.77
AF039719-5|AAB96755.1| 699|Caenorhabditis elegans Blistered cut... 31 0.77
AF039719-4|AAB96753.1| 670|Caenorhabditis elegans Blistered cut... 31 0.77
AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered cut... 31 0.77
AF039719-2|AAB96757.1| 827|Caenorhabditis elegans Blistered cut... 31 0.77
AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered cut... 31 0.77
U28991-14|AAA68388.1| 352|Caenorhabditis elegans Hypothetical p... 31 1.0
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p... 30 1.3
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 28 5.4
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 7.2
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 28 7.2
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 7.2
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 7.2
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 27 9.5
U80023-15|AAG24046.1| 343|Caenorhabditis elegans Serpentine rec... 27 9.5
AC006693-3|AAF60377.1| 455|Caenorhabditis elegans Skn related p... 27 9.5
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/75 (41%), Positives = 49/75 (65%)
Frame = +2
Query: 257 DDNDQNYVAAESALDRMCCGLGGKIMLGLIVGQVPVMLQSEDWXXRHAALMAVSSAGEGC 436
+D + + AESA+DR+ C + GK+ML + + V +L SEDW +HAAL A S+ GEGC
Sbjct: 327 EDYEDIPIIAESAIDRVACCINGKVMLPVFLPLVEKLLTSEDWKMKHAALRAFSAVGEGC 386
Query: 437 HKQMEQMLDQVVTAV 481
+ ME ++Q++ +
Sbjct: 387 QRSMEPHIEQIMAHI 401
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/71 (28%), Positives = 39/71 (54%)
Frame = +3
Query: 12 KFLRPQLETIFQVCIKVVGDKDAEDNWRQLALEAMVTLCETAPAMVRKQVPNAVSMLTPL 191
K L + + QV + + G+K+ + RQ A+E + + E+AP ++K P A+ +
Sbjct: 244 KCLNTHMSQVLQVTLAIAGNKEKNEMVRQNAIEVICSYMESAPKGLKKYAPGALGPILET 303
Query: 192 VLEMMCELDEE 224
+L M E+D++
Sbjct: 304 LLSCMTEMDDD 314
>L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease
protein.
Length = 570
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 420 EXTAIKAAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSN 295
E + A R + D +T P+ + S++LPPRPQ +N
Sbjct: 164 EHVQVHATVRYLKRGDLKLTLFSPSGTRSVLLPPRPQDFNAN 205
>L29439-1|AAA98751.1| 658|Caenorhabditis elegans endoprotease
protein.
Length = 658
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 420 EXTAIKAAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSN 295
E + A R + D +T P+ + S++LPPRPQ +N
Sbjct: 537 EHVQVHATVRYLKRGDLKLTLFSPSGTRSVLLPPRPQDFNAN 578
>L29438-1|AAA98750.1| 684|Caenorhabditis elegans endoprotease
protein.
Length = 684
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 420 EXTAIKAAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSN 295
E + A R + D +T P+ + S++LPPRPQ +N
Sbjct: 537 EHVQVHATVRYLKRGDLKLTLFSPSGTRSVLLPPRPQDFNAN 578
>AF039719-6|AAO12410.1| 666|Caenorhabditis elegans Blistered
cuticle protein 4, isoformf protein.
Length = 666
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 420 EXTAIKAAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSN 295
E + A R + D +T P+ + S++LPPRPQ +N
Sbjct: 537 EHVQVHATVRYLKRGDLKLTLFSPSGTRSVLLPPRPQDFNAN 578
>AF039719-5|AAB96755.1| 699|Caenorhabditis elegans Blistered
cuticle protein 4, isoforme protein.
Length = 699
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 420 EXTAIKAAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSN 295
E + A R + D +T P+ + S++LPPRPQ +N
Sbjct: 537 EHVQVHATVRYLKRGDLKLTLFSPSGTRSVLLPPRPQDFNAN 578
>AF039719-4|AAB96753.1| 670|Caenorhabditis elegans Blistered
cuticle protein 4, isoforma protein.
Length = 670
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 420 EXTAIKAAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSN 295
E + A R + D +T P+ + S++LPPRPQ +N
Sbjct: 537 EHVQVHATVRYLKRGDLKLTLFSPSGTRSVLLPPRPQDFNAN 578
>AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered
cuticle protein 4, isoformb protein.
Length = 730
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 420 EXTAIKAAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSN 295
E + A R + D +T P+ + S++LPPRPQ +N
Sbjct: 537 EHVQVHATVRYLKRGDLKLTLFSPSGTRSVLLPPRPQDFNAN 578
>AF039719-2|AAB96757.1| 827|Caenorhabditis elegans Blistered
cuticle protein 4, isoformc protein.
Length = 827
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 420 EXTAIKAAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSN 295
E + A R + D +T P+ + S++LPPRPQ +N
Sbjct: 537 EHVQVHATVRYLKRGDLKLTLFSPSGTRSVLLPPRPQDFNAN 578
>AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered
cuticle protein 4, isoformd protein.
Length = 942
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 420 EXTAIKAAWRXXQSSDCNITGTCPTISPSIILPPRPQHMRSN 295
E + A R + D +T P+ + S++LPPRPQ +N
Sbjct: 537 EHVQVHATVRYLKRGDLKLTLFSPSGTRSVLLPPRPQDFNAN 578
>U28991-14|AAA68388.1| 352|Caenorhabditis elegans Hypothetical
protein F08F8.1 protein.
Length = 352
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 179 HAHGIGHLFTHHGWCCLT*CYHRFKCQLAPVIFSIFVPNHLYANL 45
H HG GH F HHG+ H F+ + + F IF N++ L
Sbjct: 181 HHHGFGHGFGHHGFK----RQHPFERRFGRLTFCIFTSNNIARRL 221
>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
protein C34F6.10 protein.
Length = 1441
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 207 TSSQVQVE*ACSRHWALVYAPWLVLSHIMLP-SLQVPV 97
T+ VQV A S H AL + W VLSH P L PV
Sbjct: 952 TTISVQVRAAVSFHDALTHGDWSVLSHFTTPRGLPSPV 989
>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical protein
C34F6.10 protein.
Length = 1441
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 207 TSSQVQVE*ACSRHWALVYAPWLVLSHIMLP-SLQVPV 97
T+ VQV A S H AL + W VLSH P L PV
Sbjct: 952 TTISVQVRAAVSFHDALTHGDWSVLSHFTTPRGLPSPV 989
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 251 SVVLYGPVRLFIKLTHHLKYKWSE 180
S+V+Y + L I + HH K++W+E
Sbjct: 2327 SLVVYLSISLIIHVKHHRKFRWNE 2350
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 254 YDDNDQNYVAAESALDRMCCGLGGKIMLGLIVGQVPVMLQSE 379
Y +Q + + LDRMC LGG++ + G++ Q +
Sbjct: 593 YLPKEQYLYSKDQLLDRMCMTLGGRVAEEIFFGRITTGAQDD 634
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
protein F39B2.4b protein.
Length = 1589
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 356 LVPQ*VPALSCHQDHSTCGPMLILLPHNSGHYR--HSSVVLY 237
L P P SC ++H I+ PH++ YR H+S LY
Sbjct: 262 LHPSFYPLTSCWEEHGLNASNTIVQPHHTLPYRPEHTSTYLY 303
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
protein F39B2.4a protein.
Length = 1587
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 356 LVPQ*VPALSCHQDHSTCGPMLILLPHNSGHYR--HSSVVLY 237
L P P SC ++H I+ PH++ YR H+S LY
Sbjct: 262 LHPSFYPLTSCWEEHGLNASNTIVQPHHTLPYRPEHTSTYLY 303
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 383 NLQIATLQVLVPQ*VPALSCHQDHSTCGPM 294
N T +L PQ +L C +H+TCG M
Sbjct: 301 NGHAVTCDILEPQRPKSLLCRCEHNTCGDM 330
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 383 NLQIATLQVLVPQ*VPALSCHQDHSTCGPM 294
N T +L PQ +L C +H+TCG M
Sbjct: 301 NGHAVTCDILEPQRPKSLLCRCEHNTCGDM 330
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 356 LVPQ*VPALSCHQDHSTCGPMLILLPHNSGHYR--HSSVVLY 237
L P P SC ++H I+ PH++ YR H+S LY
Sbjct: 262 LHPSFYPLTSCWEEHGLNASNTIVQPHHTLPYRPEHTSTYLY 303
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 383 NLQIATLQVLVPQ*VPALSCHQDHSTCGPM 294
N T +L PQ +L C +H+TCG M
Sbjct: 301 NGHAVTCDILEPQRPKSLLCRCEHNTCGDM 330
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 383 NLQIATLQVLVPQ*VPALSCHQDHSTCGPM 294
N T +L PQ +L C +H+TCG M
Sbjct: 301 NGHAVTCDILEPQRPKSLLCRCEHNTCGDM 330
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 442 TDGTDARPSCY-CCLNYLIXL-IPGTYAACNAVGXCQLICTVLK 567
TD T R SC CL+ +PG N C+ CT++K
Sbjct: 214 TDETTCRTSCSSACLSVCASSGVPGNECQSNCAPACEDTCTIVK 257
>U80023-15|AAG24046.1| 343|Caenorhabditis elegans Serpentine
receptor, class h protein200 protein.
Length = 343
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 171 RHWALVYAPWLVLSHIMLPSLQVPVG 94
R W PWLV +H+++ +P+G
Sbjct: 133 RKWKYWRRPWLVANHVIVLLFVIPIG 158
>AC006693-3|AAF60377.1| 455|Caenorhabditis elegans Skn related
protein 1 protein.
Length = 455
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -1
Query: 212 LTHHLKYKWSEHAHGIGHLFTHHGWCCLT*CYHRFKCQLAPVIFSIFVPNHLYANLEYGL 33
L H K+ +SE +F + W Y FK + I NHL+ + +GL
Sbjct: 271 LYHSQKHSFSERTTKFVRIFYNDIWSLPHWRYSTFKRDQTEIFHKILQLNHLFYLVSFGL 330
Query: 32 Q 30
+
Sbjct: 331 K 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,725
Number of Sequences: 27780
Number of extensions: 353036
Number of successful extensions: 899
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -