Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060474.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.39 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   6.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   6.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 366 ITGTCPTISPSIILPPR 316
           +TGT PT+ P   LPPR
Sbjct: 476 LTGTYPTLLPQWCLPPR 492


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = -3

Query: 102 PVGASYLQHLCPQPPLC----KLGIWSPAG 25
           P G   L +L P PP C    KLGI    G
Sbjct: 71  PPGPKDLVYLEPSPPFCEKNPKLGILGTHG 100


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = -3

Query: 102 PVGASYLQHLCPQPPLC----KLGIWSPAG 25
           P G   L +L P PP C    KLGI    G
Sbjct: 72  PPGPKDLVYLEPSPPFCEKNPKLGILGTHG 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,385
Number of Sequences: 438
Number of extensions: 4357
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)