Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060474.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    58   5e-09
At5g24310.2 68418.m02860 expressed protein strong similarity to ...    32   0.31 
At5g24310.1 68418.m02861 expressed protein strong similarity to ...    32   0.31 
At2g38080.1 68415.m04674 laccase, putative / diphenol oxidase, p...    29   2.2  
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ...    29   2.9  
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica...    28   6.7  
At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloropla...    28   6.7  
At1g10340.2 68414.m01165 ankyrin repeat family protein contains ...    28   6.7  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 27/71 (38%), Positives = 40/71 (56%)
 Frame = +2

Query: 272 NYVAAESALDRMCCGLGGKIMLGLIVGQVPVMLQSEDWXXRHAALMAVSSAGEGCHKQME 451
           NY   +  LDR+   LGG  ++ +   Q    L + +W   HA+L+A++   EGC K M 
Sbjct: 355 NYSMGQECLDRLAISLGGNTIVPVAYQQFSAYLAASEWQKHHASLIALAQIAEGCSKVMI 414

Query: 452 QMLDQVVTAVL 484
           + LDQVV+ VL
Sbjct: 415 KNLDQVVSMVL 425



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
 Frame = +3

Query: 12  KFLRPQLETIFQVCIKVVGDKDAEDNWRQLALEAMVTLCET---APAMVRKQVPNAVSML 182
           +FLR QL  I    +++      E++ R LA+E +VTL E    AP MVRK +P  +  L
Sbjct: 265 RFLRRQLVDIVGSMLQIAEADSLEESTRHLAIEFLVTLAEARERAPGMVRK-LPQFIDRL 323

Query: 183 TPLVLEMMCELDEEPDW 233
             ++++M+ +++++P W
Sbjct: 324 FAVLMKMLEDIEDDPAW 340


>At5g24310.2 68418.m02860 expressed protein strong similarity to
           unknown protein (emb|CAB66408.1)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 60  VVGDKDAEDNWRQLALEAMVTLCETAPAMVRKQVPNAVSMLTP 188
           V G  D ED+W Q       T+ ET P  VRK +  + S   P
Sbjct: 159 VEGSFDGEDDWNQFRNAVRATIRETPPPPVRKPILQSPSQRKP 201


>At5g24310.1 68418.m02861 expressed protein strong similarity to
           unknown protein (emb|CAB66408.1)
          Length = 321

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 60  VVGDKDAEDNWRQLALEAMVTLCETAPAMVRKQVPNAVSMLTP 188
           V G  D ED+W Q       T+ ET P  VRK +  + S   P
Sbjct: 159 VEGSFDGEDDWNQFRNAVRATIRETPPPPVRKPILQSPSQRKP 201


>At2g38080.1 68415.m04674 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 558

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 272 SGHYRHSSVVLYGPVRLFIKLTHHLKYKWSEHAHGIGHLFTHHGW 138
           +G Y   ++       L IK+ +H+KY  S H HG+  + T  GW
Sbjct: 51  NGRYPGPTIYAREDDTLLIKVVNHVKYNVSIHWHGVRQVRT--GW 93


>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
           similar to SP|Q92973 Importin beta-2 subunit
           (Transportin) {Homo sapiens}; contains Pfam profile
           PF03810: Importin-beta N-terminal domain
          Length = 891

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 377 EDWXXRHAALMAVSSAGEGCHKQMEQMLDQVVTAVL 484
           E W  R AA++A+ +  EGC   +   L ++V  +L
Sbjct: 405 EAWKQREAAVLALGAIAEGCMNGLYPHLSEIVAFLL 440


>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 1277

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 368 LQSEDWXXRHAALMAVSSAGEGCHKQMEQMLDQ 466
           L  ED     AAL+A++   +GC + +EQ  D+
Sbjct: 551 LNLEDDYDERAALLAIAKRRKGCQQSLEQNKDE 583


>At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloroplast,
           putative / O-succinylhomoserine (Thiol)-lyase, putative
           strong similarity to SP|P55217 Cystathionine
           gamma-synthase, chloroplast precursor (EC 4.2.99.9)
           (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis
           thaliana}; contains Pfam profile PF01053: Cys/Met
           metabolism PLP-dependent enzyme
          Length = 412

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 263 NDQNYVAAESALDRMCCGLGG 325
           ++Q +V  ES ++R+CCG  G
Sbjct: 9   SNQRFVTRESEVNRICCGFNG 29


>At1g10340.2 68414.m01165 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 574

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = +3

Query: 93  RQLALEAMVTLCETAPAMVRKQVPNAVSMLTPLVLEMMCELDEEPDWTIQDNTAMTIM 266
           R  ++EA   + E   ++   ++  A+S +   +LE   +L  E  W ++D +  T++
Sbjct: 114 RSNSIEAARLIAEKTQSIGLGELILAISSIVGTILERFPDLAREEAWVVEDGSQSTLL 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,287
Number of Sequences: 28952
Number of extensions: 324028
Number of successful extensions: 784
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)