Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060473.seq
(428 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu... 126 1e-28
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul... 112 3e-24
UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4... 111 4e-24
UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellu... 90 2e-17
UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17; Archa... 81 1e-14
UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4; ce... 67 1e-10
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze... 63 3e-09
UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN full... 54 1e-06
UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;... 52 4e-06
UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1; ... 48 8e-05
UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondr... 47 2e-04
UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=... 45 8e-04
UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2; Bilateria|... 41 0.009
UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondria... 41 0.009
UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1; ... 39 0.038
UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S riboso... 39 0.051
UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8; Euteleostomi|... 38 0.12
UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.47
UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6; Sacchar... 36 0.47
UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondria... 36 0.47
UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1; ... 34 1.4
UniRef50_O85884 Cluster: Putative uncharacterized protein orf433... 33 2.5
UniRef50_A4LVV0 Cluster: Tetratricopeptide TPR_2 repeat protein ... 33 3.3
UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellul... 33 3.3
UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, wh... 32 4.4
UniRef50_A1BIV6 Cluster: ABC-2 type transporter; n=1; Chlorobium... 32 5.8
UniRef50_A5BKA5 Cluster: Putative uncharacterized protein; n=1; ... 31 7.7
UniRef50_Q4UHK0 Cluster: Putative uncharacterized protein; n=2; ... 31 7.7
>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
(Human)
Length = 143
Score = 126 bits (305), Expect = 1e-28
Identities = 56/66 (84%), Positives = 63/66 (95%)
Frame = +3
Query: 63 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 243 IKNGRK 260
IKNG+K
Sbjct: 75 IKNGKK 80
Score = 66.5 bits (155), Expect = 2e-10
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYK 423
VAGFGR GHAVGDIPGVR+ VVKVANVSLLALYK
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Score = 44.4 bits (100), Expect = 0.001
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
KK+TAFVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 145
Score = 112 bits (270), Expect = 3e-24
Identities = 51/77 (66%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Frame = +3
Query: 33 PRNTNGA*HVN-HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 209
PR N A + HRR RWA+ +KK +GT +K++PFGG+SHAKGIVLEK+G+E+KQPN
Sbjct: 6 PRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPN 65
Query: 210 SAIRKCVRVQLIKNGRK 260
SAIRKCVRVQLIKNG+K
Sbjct: 66 SAIRKCVRVQLIKNGKK 82
Score = 55.6 bits (128), Expect = 4e-07
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
+AGFGR G A GDIPGVR+ VVKV+ VSLLAL+KE
Sbjct: 104 LAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKE 138
Score = 43.2 bits (97), Expect = 0.002
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
KKVTAFVP DGCLN ++ENDE
Sbjct: 81 KKVTAFVPNDGCLNFVDENDE 101
>UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4;
Oryza sativa|Rep: Putative 40s ribosomal protein S23 -
Oryza sativa (Rice)
Length = 301
Score = 111 bits (268), Expect = 4e-24
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +3
Query: 66 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 245
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 246 KNGRK 260
KNG+K
Sbjct: 146 KNGKK 150
Score = 36.3 bits (80), Expect = 0.27
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEEN 310
KK+ AFVP DGCLN I+EN
Sbjct: 149 KKIAAFVPNDGCLNFIKEN 167
>UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellular
organisms|Rep: 30S ribosomal protein S12P - Uncultured
methanogenic archaeon RC-I
Length = 142
Score = 90.2 bits (214), Expect = 2e-17
Identities = 41/67 (61%), Positives = 53/67 (79%)
Frame = +3
Query: 60 VNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 239
V+ R+ RW+D+++ + + KA+P GA AKGIVLEKVGVEAKQPNSAIRKC+R+Q
Sbjct: 12 VHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQ 71
Query: 240 LIKNGRK 260
LIKNGR+
Sbjct: 72 LIKNGRQ 78
Score = 35.1 bits (77), Expect = 0.62
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 334 GRXGHAVGDIPGVRYXVVKVANVSL 408
GR G + GDIPGVR+ V KV +VSL
Sbjct: 105 GRMGGSYGDIPGVRFRVFKVNDVSL 129
>UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17;
Archaea|Rep: 30S ribosomal protein S12P - Pyrobaculum
aerophilum
Length = 147
Score = 80.6 bits (190), Expect = 1e-14
Identities = 36/63 (57%), Positives = 49/63 (77%)
Frame = +3
Query: 69 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 248
R++ RW D +K+ +G K +P GA A+GIVLEKVGVEA++PN+A+RKCVRVQL+K
Sbjct: 20 RQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVK 79
Query: 249 NGR 257
NG+
Sbjct: 80 NGK 82
Score = 38.3 bits (85), Expect = 0.067
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +1
Query: 334 GRXGHAVGDIPGVRYXVVKVANVSLLALYK 423
G G ++GDIPGVR+ V+KV VSL A+++
Sbjct: 110 GPEGRSLGDIPGVRFKVIKVNGVSLWAIWR 139
Score = 34.3 bits (75), Expect = 1.1
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
K VTAFVP DG LN+I E+DE
Sbjct: 82 KVVTAFVPLDGSLNYINEHDE 102
>UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4;
cellular organisms|Rep: Protein splicing (Intein) site -
Caldivirga maquilingensis IC-167
Length = 661
Score = 67.3 bits (157), Expect = 1e-10
Identities = 31/61 (50%), Positives = 44/61 (72%)
Frame = +3
Query: 69 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 248
R++ RW+D ++KK +G K +P GA A+GIVLEKVGVEA++PN+A+RKCV +
Sbjct: 20 RQKFRWSDIQYKKRALGFIKKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVTPDTLI 79
Query: 249 N 251
N
Sbjct: 80 N 80
Score = 35.1 bits (77), Expect = 0.62
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 334 GRXGHAVGDIPGVRYXVVKVANVSLLAL 417
G G A GD+PGVR+ V KV VSL A+
Sbjct: 624 GPEGRAYGDLPGVRFKVTKVNGVSLKAI 651
>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
mays|Rep: Putative 40S ribosomal protein - Zea mays
(Maize)
Length = 309
Score = 62.9 bits (146), Expect = 3e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
+AGFGR GHAVGDIPGVR+ VVKV+ VSLLAL+KE
Sbjct: 228 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 262
>UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence; n=8;
Euarchontoglires|Rep: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 154
Score = 54.4 bits (125), Expect = 1e-06
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = -1
Query: 260 LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPS 81
L VLNEL+ DA DGR+ L F + ++LC+R T +R+ L VGFL FV P
Sbjct: 31 LLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMPL 90
Query: 80 LFTTV 66
L +V
Sbjct: 91 LVPSV 95
>UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 143
Score = 52.4 bits (120), Expect = 4e-06
Identities = 27/65 (41%), Positives = 36/65 (55%)
Frame = -1
Query: 260 LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPS 81
L VLNEL+ DA DGR+ L F + ++LC+R +R+ L VGFL FV P
Sbjct: 62 LLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGAPKRIGLQGCAQVGFLVLFVMPL 121
Query: 80 LFTTV 66
L +V
Sbjct: 122 LVPSV 126
>UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 102
Score = 48.0 bits (109), Expect = 8e-05
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = -2
Query: 277 GDECGHFLPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 158
G + FLPFL++ T TH +AE GCL S P FS+T+P A
Sbjct: 63 GTKAVTFLPFLINWTSTHFSIAEFGCLDSIPIFSKTIPLA 102
Score = 39.9 bits (89), Expect = 0.022
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = -1
Query: 428 FSL*RARRDTLATFTTL*RTPGMSPTA*PLRPNPATSIRRF 306
FS +A ++T T TTL TPG+SP A PL P PA F
Sbjct: 12 FSFHKANKETPETLTTLNLTPGISPLALPLLPKPANKTSSF 52
Score = 31.9 bits (69), Expect = 5.8
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -3
Query: 315 SSFSSMWFRQPSRGTNAVTF 256
SSFSS F+QPS GT AVTF
Sbjct: 50 SSFSSTKFKQPSFGTKAVTF 69
>UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein S12; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to mitochondrial ribosomal protein
S12 - Nasonia vitripennis
Length = 173
Score = 46.8 bits (106), Expect = 2e-04
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +3
Query: 135 NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
NPF GA AKG+VL+ + + K+PNSA RKCV V+L NG++
Sbjct: 83 NPFNGAPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 123
>UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=3;
Coelomata|Rep: Mitochondrial ribosomal protein S12 -
Bombyx mori (Silk moth)
Length = 111
Score = 44.8 bits (101), Expect = 8e-04
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +3
Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
H+ + NP G AKG+VL+ V + K+PNSA RKCV V+L NG++
Sbjct: 13 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKE 61
>UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2;
Bilateria|Rep: EG:BACH59J11.1 protein - Drosophila
melanogaster (Fruit fly)
Length = 154
Score = 41.1 bits (92), Expect = 0.009
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L
Sbjct: 56 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 99
>UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondrial
precursor; n=7; Coelomata|Rep: 40S ribosomal protein
S12, mitochondrial precursor - Drosophila melanogaster
(Fruit fly)
Length = 140
Score = 41.1 bits (92), Expect = 0.009
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L
Sbjct: 42 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 85
>UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 128
Score = 39.1 bits (87), Expect = 0.038
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVK 390
++GFG GHAVGDI GVR+ VVK
Sbjct: 71 ISGFGHKGHAVGDIRGVRFEVVK 93
>UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S ribosomal
protein S12, mitochondrial precursor (MT-RPS12)
(Technical knockout locus protein); n=2; Coelomata|Rep:
PREDICTED: similar to 40S ribosomal protein S12,
mitochondrial precursor (MT-RPS12) (Technical knockout
locus protein) - Tribolium castaneum
Length = 156
Score = 38.7 bits (86), Expect = 0.051
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +3
Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
H+ + P G KG+VL+ + + K+PNSA RKCV V+L NG++
Sbjct: 60 HIKERKPRRPLDGKPFMKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 108
>UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8;
Euteleostomi|Rep: Mrps12-prov protein - Xenopus laevis
(African clawed frog)
Length = 150
Score = 37.5 bits (83), Expect = 0.12
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 138 PFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
P G KG+VL+ + + K+PNSA RKC RV+L NG++
Sbjct: 62 PTFGCPQLKGVVLKTMIRKPKKPNSANRKCARVRL-SNGKE 101
>UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 157
Score = 35.5 bits (78), Expect = 0.47
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 147 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
G SH KGIVL+ V K+PNS RKC V+L
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103
>UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6;
Saccharomycetales|Rep: 30S ribosomal protein S12 -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 183
Score = 35.5 bits (78), Expect = 0.47
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +3
Query: 162 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGR 257
+G++L + ++ K+PNSA+RKC RV+L NG+
Sbjct: 90 RGVILRIMILKPKKPNSALRKCARVRL-SNGK 120
>UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondrial
precursor; n=13; Deuterostomia|Rep: 28S ribosomal
protein S12, mitochondrial precursor - Homo sapiens
(Human)
Length = 138
Score = 35.5 bits (78), Expect = 0.47
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +3
Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
K P G KG+VL + K+PNSA RKC RV+L GR+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90
>UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1;
Mesorhizobium sp. BNC1|Rep: Putative uncharacterized
protein - Mesorhizobium sp. (strain BNC1)
Length = 338
Score = 33.9 bits (74), Expect = 1.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 256 LPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 158
LP + R+H ++ E+ C + P +S T+PFA
Sbjct: 239 LPTAFNSARSHNKILEIACFGAAPVYSSTVPFA 271
>UniRef50_O85884 Cluster: Putative uncharacterized protein orf433;
n=2; Novosphingobium aromaticivorans|Rep: Putative
uncharacterized protein orf433 - Sphingomonas
aromaticivorans
Length = 651
Score = 33.1 bits (72), Expect = 2.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 329 PATSIRRFLRCGLGNRHGGRMRSLSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRC 150
P + +LR +GN HG +++ + + LN+L + F D R + + +T A +
Sbjct: 95 PVWAAHEYLRHHMGNLHGKKLKGIETALNDLANNTFNDLRPYIDTSFTGDSRSPAEIIAA 154
Query: 149 T 147
T
Sbjct: 155 T 155
>UniRef50_A4LVV0 Cluster: Tetratricopeptide TPR_2 repeat protein
precursor; n=1; Geobacter bemidjiensis Bem|Rep:
Tetratricopeptide TPR_2 repeat protein precursor -
Geobacter bemidjiensis Bem
Length = 596
Score = 32.7 bits (71), Expect = 3.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 142 KGLAFHFVPMWAFLNSLSAHRCSRRWFTCYAPFVFLGVYPFG*H 11
+GL+F + WAF++++S H W + + F G+ P G H
Sbjct: 64 EGLSFESIK-WAFMSNVSGHWHPLTWLSLMMDYQFFGLDPMGYH 106
>UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellular
organisms|Rep: 30S ribosomal protein S12 - Aquifex
aeolicus
Length = 128
Score = 32.7 bits (71), Expect = 3.3
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 123 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNG 254
K KA G +G+ + V K+PNSA+RK RV+L NG
Sbjct: 18 KSKAPALQGCPQKRGVCVRVYTVTPKKPNSALRKVARVRL-SNG 60
>UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_29,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 107
Score = 32.3 bits (70), Expect = 4.4
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 66 HRREQ--RWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 239
H+R Q W K+F K + T+ + G H KG+++ K G + N + + +++
Sbjct: 30 HKRVQGRAWRRKQFNKRKVQTQLQKTLVGQQIHLKGVLVHKKGPNWHKGNKQLLEKEKIE 89
Query: 240 LIKNGRK 260
L++ R+
Sbjct: 90 LVQLKRE 96
>UniRef50_A1BIV6 Cluster: ABC-2 type transporter; n=1; Chlorobium
phaeobacteroides DSM 266|Rep: ABC-2 type transporter -
Chlorobium phaeobacteroides (strain DSM 266)
Length = 260
Score = 31.9 bits (69), Expect = 5.8
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = -1
Query: 167 ALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVV----HVLRAVRIPRGLPI 21
AL +R T R R ++GFL F+ P+LFT ++ H RA R+ G+PI
Sbjct: 17 ALLMRETITRYG---RNNIGFLWLFIEPALFTVMITIVWHFTRAGRV-TGIPI 65
>UniRef50_A5BKA5 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 290
Score = 31.5 bits (68), Expect = 7.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 344 PLRPNPATSIRRFLRCGLGNRHGGRMRSLSSVLN 243
PL P P LRCGLG++ G M + LN
Sbjct: 134 PLLPTPCLQSDYILRCGLGSKANGGMPKVRKTLN 167
>UniRef50_Q4UHK0 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 428
Score = 31.5 bits (68), Expect = 7.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 272 RMRSLSSVLNELYTDAFADGRVGLL-SFYTNFLEDDALCVRCTTERVSLPFRTHVG 108
R R + + Y F LL SFYT L D+++C R TT+ + + +G
Sbjct: 293 RSRDVLDTIKNYYNKLFFKDNYNLLYSFYTLVLNDNSICPRKTTDELDSIIQAKLG 348
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,482,424
Number of Sequences: 1657284
Number of extensions: 8902736
Number of successful extensions: 19473
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19472
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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