Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060473.seq
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   118   4e-28
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   118   4e-28
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    30   0.13 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   1.2  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   2.2  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   3.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.6  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  118 bits (284), Expect = 4e-28
 Identities = 51/66 (77%), Positives = 61/66 (92%)
 Frame = +3

Query: 63  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 243 IKNGRK 260
           IKNG+K
Sbjct: 75  IKNGKK 80



 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
           ++GFGR G A GDIPGVR+ VVKVA V L AL+ E
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHE 136



 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KKVTAFVP DGCLN ++ENDE
Sbjct: 79  KKVTAFVPHDGCLNFVDENDE 99


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  118 bits (284), Expect = 4e-28
 Identities = 51/66 (77%), Positives = 61/66 (92%)
 Frame = +3

Query: 63  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 243 IKNGRK 260
           IKNG+K
Sbjct: 75  IKNGKK 80



 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
           ++GFGR G A GDIPGVR+ VVKVA V L AL+ E
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHE 136



 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KKVTAFVP DGCLN ++ENDE
Sbjct: 79  KKVTAFVPHDGCLNFVDENDE 99


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 147 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           G+   +G+      V+ K+PNSA+RK  RV+L
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 188 TNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLRAVRIPRGLPIW 18
           ++F +D++ C  CT   V+LP       LE F  PS    V H++ A  +P+ +P W
Sbjct: 302 SDFRQDESYCRICTQSCVTLP-----DILEAF--PSCHPPVDHLISA--LPQLMPRW 349


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 344 PLRPNPATSIRRFLRCGLGNRHGGRMRSLSSVLNELYTDAFA 219
           PLR      ++RFL     NR+   + S+  ++N LYTD F+
Sbjct: 794 PLRELSHYIVQRFLVQQDSNRYLHPLLSVMDLINLLYTDIFS 835


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 84  WADKEFKKAHMGTKWKANPFGGASHAKGIV 173
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 281  DGCLNHIEENDEY*WR 328
            D C+ H+E N+E  W+
Sbjct: 1830 DSCVRHLENNEETDWK 1845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,684
Number of Sequences: 5004
Number of extensions: 34953
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)