Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060473.seq
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 116 1e-26
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 116 1e-26
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 111 2e-25
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 39 0.001
04_01_0440 + 5746474-5746662,5746895-5747251 30 0.91
08_01_0401 - 3569545-3570003 28 3.7
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 28 3.7
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 28 3.7
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 8.5
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 27 8.5
04_01_0025 - 348326-348566,349750-350912 27 8.5
03_05_0173 + 21502765-21504216 27 8.5
03_01_0298 + 2318836-2319051,2321238-2323106 27 8.5
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 116 bits (278), Expect = 1e-26
Identities = 49/65 (75%), Positives = 58/65 (89%)
Frame = +3
Query: 66 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 245
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 246 KNGRK 260
KNG+K
Sbjct: 75 KNGKK 79
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
+AGFGR GHAVGDIPGVR+ VVKV+ VSLLAL+KE
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
KK+ AFVP DGCLN IEENDE
Sbjct: 78 KKIAAFVPNDGCLNFIEENDE 98
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 116 bits (278), Expect = 1e-26
Identities = 49/65 (75%), Positives = 58/65 (89%)
Frame = +3
Query: 66 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 245
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 246 KNGRK 260
KNG+K
Sbjct: 75 KNGKK 79
Score = 116 bits (278), Expect = 1e-26
Identities = 49/65 (75%), Positives = 58/65 (89%)
Frame = +3
Query: 66 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 245
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 186 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244
Query: 246 KNGRK 260
KNG+K
Sbjct: 245 KNGKK 249
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
+AGFGR GHAVGDIPGVR+ VVKV+ VSLLAL+KE
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
+AGFGR GHAVGDIPGVR+ VVKV+ VSLLAL+KE
Sbjct: 271 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 305
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
KK+ AFVP DGCLN IEENDE
Sbjct: 78 KKIAAFVPNDGCLNFIEENDE 98
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
KK+ AFVP DGCLN IEENDE
Sbjct: 248 KKIAAFVPNDGCLNFIEENDE 268
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 111 bits (268), Expect = 2e-25
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +3
Query: 66 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 245
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 246 KNGRK 260
KNG+K
Sbjct: 146 KNGKK 150
Score = 37.1 bits (82), Expect = 0.006
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEEND 313
KK+ AFVP DGCLN I+EN+
Sbjct: 149 KKIAAFVPNDGCLNFIKENE 168
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVK 390
++GFG GHAVGDI GVR+ VVK
Sbjct: 71 ISGFGHKGHAVGDIRGVRFEVVK 93
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 29.9 bits (64), Expect = 0.91
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 11 VLSKWVNPEEYERRVTREPPS*T--AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 178
VL K + + + VT + T A+GG P GY+ +G PF C KG+ PR
Sbjct: 101 VLEKLMKKHQLDAIVTPNSDASTIFAIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>08_01_0401 - 3569545-3570003
Length = 152
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/66 (25%), Positives = 24/66 (36%)
Frame = +3
Query: 30 TPRNTNGA*HVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 209
TP+ T G +H R + A E ++ W A P KGI + +
Sbjct: 78 TPKFTGGVLGASHMRVEAAAVAELREWEKTRSWIAGPAEDRRRRKGIAMVATTAREDEGV 137
Query: 210 SAIRKC 227
S R C
Sbjct: 138 SGRRNC 143
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 414 SEERHVGYFYXXITNSGNVTDGVTXTTESRH*YSSFSSM 298
SE++H GY + ++T GV+ T+S SFSSM
Sbjct: 276 SEQQHSGYGVVGADQAASMTAGVSAYTDSISNSISFSSM 314
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -1
Query: 305 LRCGLGNR-HGGRMRSLSSVLN 243
LR LGNR HGGR+R +SS L+
Sbjct: 152 LRQALGNREHGGRVRGVSSKLS 173
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 123 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 227
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 80 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 178
A+GG P GY+ G PF C KG+ PR
Sbjct: 456 AIGGMPAITVPAGYDGHGVPFGICFGGLKGYEPR 489
>04_01_0025 - 348326-348566,349750-350912
Length = 467
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 111 GLS*ILCPPIA-VHDGGSRVTRRSYSS 34
GL+ +L P V D GSR TR SYSS
Sbjct: 199 GLALLLLPASRIVRDDGSRATRMSYSS 225
>03_05_0173 + 21502765-21504216
Length = 483
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 365 GMSPTA*PLRPNPATSIRRFLRCGLGNRHGGR 270
G P A PNPA + ++ R G NR GGR
Sbjct: 343 GPQPVAAGAAPNPAGNQQQGQRKGGANRRGGR 374
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 26.6 bits (56), Expect = 8.5
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1
Query: 230 DAFADGRVGLLSFYTNFLEDDALCVRCTTERVSL 129
DAFA GLLS ++D LC+ C E VSL
Sbjct: 422 DAFAQCMGGLLSVV---VKDMRLCIECIDEGVSL 452
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,837
Number of Sequences: 37544
Number of extensions: 273602
Number of successful extensions: 629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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