Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060473.seq
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              125   1e-29
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               65   2e-11
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   2.9  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   6.6  
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)                 27   6.6  
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  125 bits (302), Expect = 1e-29
 Identities = 56/66 (84%), Positives = 62/66 (93%)
 Frame = +3

Query: 63  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 14  SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73

Query: 243 IKNGRK 260
           IKNG+K
Sbjct: 74  IKNGKK 79



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVP DGCLN+IEENDE
Sbjct: 78  KKITAFVPNDGCLNYIEENDE 98



 Score = 36.3 bits (80), Expect = 0.011
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGV 372
           ++GFGR GHAVGDIPG+
Sbjct: 101 ISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
           ++GFGR GHAVGDIPGVR+ VVKVANVSLLAL+KE
Sbjct: 102 ISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKE 136



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +3

Query: 177 EKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           ++ GVEAKQPNSAIRKCVRVQLIKNG+K
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVP DGCLN+IEENDE
Sbjct: 79  KKITAFVPNDGCLNYIEENDE 99


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 107 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 205
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -1

Query: 287  NRHGGRMRSLS--SVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTE-RVSLPFRT 117
            +R+GGRM+SL+  S  N +  D      +   + + +  ED++  +  +T   + LP+RT
Sbjct: 1851 SRNGGRMKSLANRSGRNGVIRDLLGSQALDTAASFESLTEDESAAITGSTVCSIPLPYRT 1910


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 175  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 80
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 88  RTKNSRKPTWVRNGRLTLSVVHLT 159
           R  N++KP  +R+GR+T+S+  +T
Sbjct: 110 RDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
          Length = 1088

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 268 CGHFLPFLMSCTRTHLRMAELGCLASTPTFS 176
           CG FL F M+       + ELGC+ S P  S
Sbjct: 608 CGAFLTFGMAAAVIGPTLLELGCVTSRPVNS 638


>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 341 LRPNPATSIRRFLRCGLGNRHGGRMRSLSSVLNELYT 231
           LR     +I R L+ GL N        LSSV N+LYT
Sbjct: 504 LRKEALENICRSLKAGLTNDENCVQAFLSSVSNKLYT 540


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,662
Number of Sequences: 59808
Number of extensions: 305951
Number of successful extensions: 584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)