Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060473.seq
         (428 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   126   2e-29
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               126   2e-29
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   126   2e-29
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...    66   4e-11
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    36   0.077
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               36   0.077
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    36   0.077
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    36   0.077
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    36   0.077
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    36   0.077
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.     30   3.8  
AK098732-1|BAC05396.1|  166|Homo sapiens protein ( Homo sapiens ...    29   5.1  
BC064930-1|AAH64930.1|  738|Homo sapiens ATP-binding cassette, s...    29   8.8  
AL121990-4|CAI22012.1|  738|Homo sapiens ATP-binding cassette, s...    29   8.8  
AF216833-1|AAF78198.1|  738|Homo sapiens M-ABC2 protein protein.       29   8.8  
AB013380-1|BAB20265.1|  737|Homo sapiens mono ATP-binding casset...    29   8.8  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  126 bits (305), Expect = 2e-29
 Identities = 56/66 (84%), Positives = 63/66 (95%)
 Frame = +3

Query: 63  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 243 IKNGRK 260
           IKNG+K
Sbjct: 75  IKNGKK 80



 Score = 66.5 bits (155), Expect = 4e-11
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYK 423
           VAGFGR GHAVGDIPGVR+ VVKVANVSLLALYK
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135



 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  126 bits (305), Expect = 2e-29
 Identities = 56/66 (84%), Positives = 63/66 (95%)
 Frame = +3

Query: 63  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 243 IKNGRK 260
           IKNG+K
Sbjct: 75  IKNGKK 80



 Score = 66.5 bits (155), Expect = 4e-11
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYK 423
           VAGFGR GHAVGDIPGVR+ VVKVANVSLLALYK
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135



 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  126 bits (305), Expect = 2e-29
 Identities = 56/66 (84%), Positives = 63/66 (95%)
 Frame = +3

Query: 63  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 243 IKNGRK 260
           IKNG+K
Sbjct: 75  IKNGKK 80



 Score = 66.5 bits (155), Expect = 4e-11
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYK 423
           VAGFGR GHAVGDIPGVR+ VVKVANVSLLALYK
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135



 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score = 66.5 bits (155), Expect = 4e-11
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYK 423
           VAGFGR GHAVGDIPGVR+ VVKVANVSLLALYK
Sbjct: 19  VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 52



 Score = 35.5 bits (78), Expect = 0.077
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +2

Query: 269 FVPRDGCLNHIEENDE 316
           FVP DGCLN IEENDE
Sbjct: 1   FVPNDGCLNFIEENDE 16


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.077
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.077
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.077
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.077
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.077
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.077
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
          Length = 1332

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 107 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 235
           SPHG +M G P          RP ES+C         PQ RPC
Sbjct: 37  SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78


>AK098732-1|BAC05396.1|  166|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25866 fis, clone CBR01987. ).
          Length = 166

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 338 RPNPATSIRRFLRC--GLGNRHGGRMRSLSS 252
           RP+P T +R+  RC  G G R G R RS S+
Sbjct: 88  RPHPGTGLRQTPRCTKGQGPRRGRRRRSASA 118


>BC064930-1|AAH64930.1|  738|Homo sapiens ATP-binding cassette,
           sub-family B (MDR/TAP), member 10 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
 Frame = -1

Query: 326 ATSIRRFLRCGLGNRHGGRMRS--LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVR 153
           A +IR +L    G R   R+R+   SS+L +     F   R G L        D AL  R
Sbjct: 228 ANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVA-FFDKTRTGEL--INRLSSDTALLGR 284

Query: 152 CTTERVSLPFRT----HVGF-LEFFVRPSLFTTVVHVLRAVRI 39
             TE +S   R      VG  + FFV P+L T V+ V+  V I
Sbjct: 285 SVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 327


>AL121990-4|CAI22012.1|  738|Homo sapiens ATP-binding cassette,
           sub-family B (MDR/TAP), member 10 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
 Frame = -1

Query: 326 ATSIRRFLRCGLGNRHGGRMRS--LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVR 153
           A +IR +L    G R   R+R+   SS+L +     F   R G L        D AL  R
Sbjct: 228 ANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVA-FFDKTRTGEL--INRLSSDTALLGR 284

Query: 152 CTTERVSLPFRT----HVGF-LEFFVRPSLFTTVVHVLRAVRI 39
             TE +S   R      VG  + FFV P+L T V+ V+  V I
Sbjct: 285 SVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 327


>AF216833-1|AAF78198.1|  738|Homo sapiens M-ABC2 protein protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
 Frame = -1

Query: 326 ATSIRRFLRCGLGNRHGGRMRS--LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVR 153
           A +IR +L    G R   R+R+   SS+L +     F   R G L        D AL  R
Sbjct: 228 ANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVA-FFDKTRTGEL--INRLSSDTALLGR 284

Query: 152 CTTERVSLPFRT----HVGF-LEFFVRPSLFTTVVHVLRAVRI 39
             TE +S   R      VG  + FFV P+L T V+ V+  V I
Sbjct: 285 SVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 327


>AB013380-1|BAB20265.1|  737|Homo sapiens mono ATP-binding cassette
           protein protein.
          Length = 737

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
 Frame = -1

Query: 326 ATSIRRFLRCGLGNRHGGRMRS--LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVR 153
           A +IR +L    G R   R+R+   SS+L +     F   R G L        D AL  R
Sbjct: 228 ANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVA-FFDKTRTGEL--INRLSSDTALLGR 284

Query: 152 CTTERVSLPFRT----HVGF-LEFFVRPSLFTTVVHVLRAVRI 39
             TE +S   R      VG  + FFV P+L T V+ V+  V I
Sbjct: 285 SVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 327


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.316    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,365,551
Number of Sequences: 237096
Number of extensions: 1399244
Number of successful extensions: 3080
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)