Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060473.seq
         (428 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089523-1|AAL90261.1|  143|Drosophila melanogaster GM14585p pro...   143   8e-35
AE013599-1845|AAF58277.2|  143|Drosophila melanogaster CG8415-PA...   143   8e-35
M19494-1|AAA28935.1|  140|Drosophila melanogaster protein ( D.me...    41   6e-04
BT015958-1|AAV36843.1|  140|Drosophila melanogaster RH56553p pro...    41   6e-04
AL133505-2|CAB65841.1|  140|Drosophila melanogaster EG:BACH59J11...    41   6e-04
AL133505-1|CAB63528.1|  154|Drosophila melanogaster EG:BACH59J11...    41   6e-04
AE014298-399|AAF45781.1|  140|Drosophila melanogaster CG7925-PB ...    41   6e-04
AJ250320-1|CAB65721.1|  140|Drosophila melanogaster technical kn...    40   0.002
AE014297-650|AAF54148.1|  358|Drosophila melanogaster CG18268-PA...    28   4.6  
DQ138872-1|ABA86478.1| 1228|Drosophila melanogaster CG12234 prot...    28   6.1  
AY118535-1|AAM49904.1| 1241|Drosophila melanogaster LD26789p pro...    28   6.1  
AF222746-1|AAG53520.1| 1241|Drosophila melanogaster RanBP21 prot...    28   6.1  
AE014298-2905|AAF48995.1| 1241|Drosophila melanogaster CG12234-P...    28   6.1  
AY119520-1|AAM50174.1|  667|Drosophila melanogaster GH14596p pro...    27   8.1  
AF246991-1|AAF64300.1| 1640|Drosophila melanogaster unknown prot...    27   8.1  
AE014296-64|AAF47364.2| 1773|Drosophila melanogaster CG7020-PA p...    27   8.1  

>AY089523-1|AAL90261.1|  143|Drosophila melanogaster GM14585p
           protein.
          Length = 143

 Score =  143 bits (347), Expect = 8e-35
 Identities = 62/68 (91%), Positives = 68/68 (100%)
 Frame = +3

Query: 57  HVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 236
           HVNHRR+QRWADK++KKAH+GT+WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV
Sbjct: 13  HVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 72

Query: 237 QLIKNGRK 260
           QLIKNG+K
Sbjct: 73  QLIKNGKK 80



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 32/35 (91%), Positives = 33/35 (94%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
           VAGFGR GHAVGDIPGVR+ VVKVANVSLLALYKE
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 136



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVPRDG LN+IEENDE
Sbjct: 79  KKITAFVPRDGSLNYIEENDE 99


>AE013599-1845|AAF58277.2|  143|Drosophila melanogaster CG8415-PA
           protein.
          Length = 143

 Score =  143 bits (347), Expect = 8e-35
 Identities = 62/68 (91%), Positives = 68/68 (100%)
 Frame = +3

Query: 57  HVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 236
           HVNHRR+QRWADK++KKAH+GT+WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV
Sbjct: 13  HVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 72

Query: 237 QLIKNGRK 260
           QLIKNG+K
Sbjct: 73  QLIKNGKK 80



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 32/35 (91%), Positives = 33/35 (94%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
           VAGFGR GHAVGDIPGVR+ VVKVANVSLLALYKE
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 136



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVPRDG LN+IEENDE
Sbjct: 79  KKITAFVPRDGSLNYIEENDE 99


>M19494-1|AAA28935.1|  140|Drosophila melanogaster protein (
           D.melanogaster tko (technical knockout) locus mRNA
           encoding tko gene product,complete cds. ).
          Length = 140

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +3

Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 85


>BT015958-1|AAV36843.1|  140|Drosophila melanogaster RH56553p
           protein.
          Length = 140

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +3

Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 85


>AL133505-2|CAB65841.1|  140|Drosophila melanogaster
           EG:BACH59J11.1,FBgn0003714;tko protein.
          Length = 140

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +3

Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 85


>AL133505-1|CAB63528.1|  154|Drosophila melanogaster
           EG:BACH59J11.1,FBgn0003714;tko protein.
          Length = 154

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +3

Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L
Sbjct: 56  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 99


>AE014298-399|AAF45781.1|  140|Drosophila melanogaster CG7925-PB
           protein.
          Length = 140

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +3

Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 85


>AJ250320-1|CAB65721.1|  140|Drosophila melanogaster technical
           knockout protein protein.
          Length = 140

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +3

Query: 111 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 239
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVR 84


>AE014297-650|AAF54148.1|  358|Drosophila melanogaster CG18268-PA
           protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 138 PFGGASHAKGIVLEKVGVEAK--QPNSAIRKCVRVQLIK 248
           PFG   +   +VLE+ G   K  Q    IRKCV +  +K
Sbjct: 123 PFGNVEYVLKVVLERRGTHNKCFQQRLVIRKCVELADLK 161


>DQ138872-1|ABA86478.1| 1228|Drosophila melanogaster CG12234 protein.
          Length = 1228

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 166  PFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRW 65
            PF    PP       VP++A L  L   R +RRW
Sbjct: 910  PFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW 943


>AY118535-1|AAM49904.1| 1241|Drosophila melanogaster LD26789p protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 166  PFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRW 65
            PF    PP       VP++A L  L   R +RRW
Sbjct: 917  PFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW 950


>AF222746-1|AAG53520.1| 1241|Drosophila melanogaster RanBP21 protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 166  PFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRW 65
            PF    PP       VP++A L  L   R +RRW
Sbjct: 917  PFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW 950


>AE014298-2905|AAF48995.1| 1241|Drosophila melanogaster CG12234-PA
            protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 166  PFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRW 65
            PF    PP       VP++A L  L   R +RRW
Sbjct: 917  PFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW 950


>AY119520-1|AAM50174.1|  667|Drosophila melanogaster GH14596p
           protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 119 YEMEG*PFRWCISRKGHRPRESWCRS*AAQLC 214
           YE+E  P  W  +   HR R+++C     +LC
Sbjct: 267 YEVEANPSLWLSTLSQHRVRDTFCSYGVIELC 298


>AF246991-1|AAF64300.1| 1640|Drosophila melanogaster unknown protein.
          Length = 1640

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 119  YEMEG*PFRWCISRKGHRPRESWCRS*AAQLC 214
            YE+E  P  W  +   HR R+++C     +LC
Sbjct: 1240 YEVEANPSLWLSTLSQHRVRDTFCSYGVIELC 1271


>AE014296-64|AAF47364.2| 1773|Drosophila melanogaster CG7020-PA
            protein.
          Length = 1773

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 119  YEMEG*PFRWCISRKGHRPRESWCRS*AAQLC 214
            YE+E  P  W  +   HR R+++C     +LC
Sbjct: 1373 YEVEANPSLWLSTLSQHRVRDTFCSYGVIELC 1404


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.316    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,019,560
Number of Sequences: 53049
Number of extensions: 420610
Number of successful extensions: 1077
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1334434944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)