Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060473.seq
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   130   3e-31
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.016
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AF077541-5|AAC64629.1|  380|Caenorhabditis elegans Hypothetical ...    26   10.0 
AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical ...    26   10.0 

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  130 bits (315), Expect = 3e-31
 Identities = 56/65 (86%), Positives = 63/65 (96%)
 Frame = +3

Query: 66  HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 245
           HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLI
Sbjct: 16  HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75

Query: 246 KNGRK 260
           KNG+K
Sbjct: 76  KNGKK 80



 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +1

Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYK 423
           V+GFGR GHAVGDIPGVR+ +VKVAN SL+AL+K
Sbjct: 102 VSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFK 135



 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDE 316
           KK+TAFVP DGCLN +EENDE
Sbjct: 79  KKITAFVPNDGCLNFVEENDE 99


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +3

Query: 147 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 263 TAFVPRDGCLNHIEEN 310
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 240 AVHGRICGWQSWAA*LLHQLSRGRC 166
           AVH + C W +WAA      S G C
Sbjct: 16  AVHSQNCTWSNWAAWTTCSDSCGNC 40


>AF077541-5|AAC64629.1|  380|Caenorhabditis elegans Hypothetical
           protein Y23H5A.4 protein.
          Length = 380

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 272 RMRSLSSVLNELYTDAFADGRVGLLSFYTNFLEDDAL 162
           ++  L+S++++L TD F      +    T F EDD+L
Sbjct: 166 KLEVLTSLVSQLETDGFLRNYDAMTPTITQFSEDDSL 202


>AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical
           protein W02G9.3 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 173 DDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLR 51
           DDA+C    T RVSL    H   + FFV+ S  T +V V R
Sbjct: 290 DDAVCALAPTARVSL---NHAD-VTFFVQVSRTTIMVGVCR 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,023,873
Number of Sequences: 27780
Number of extensions: 204799
Number of successful extensions: 422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)