Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060473.seq
(428 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 24 0.83
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 1.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 1.1
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 1.4
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 2.5
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 2.5
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 2.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 3.3
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 4.4
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 5.8
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 21 7.7
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 23.8 bits (49), Expect = 0.83
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = -1
Query: 155 RCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLRAVRIPR 33
RC+ + + + + FFV P V+++L A+++ R
Sbjct: 210 RCSMKWTLIEHAFEISTMLFFVLPMTIIIVLYILIAIKLRR 250
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.4 bits (48), Expect = 1.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 343 GHAVGDIPGVR 375
GH V D+PGVR
Sbjct: 69 GHPVNDVPGVR 79
Score = 20.6 bits (41), Expect = 7.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 374 RTPGMSPTA*PLRPNPATSIRR 309
+ PG+ P A L PN T + R
Sbjct: 1497 QAPGIPPAATFLSPNSTTLVLR 1518
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.4 bits (48), Expect = 1.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 343 GHAVGDIPGVR 375
GH V D+PGVR
Sbjct: 69 GHPVNDVPGVR 79
Score = 20.6 bits (41), Expect = 7.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 374 RTPGMSPTA*PLRPNPATSIRR 309
+ PG+ P A L PN T + R
Sbjct: 1493 QAPGIPPAATFLSPNSTTLVLR 1514
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.0 bits (47), Expect = 1.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 343 GHAVGDIPGVR 375
G AVGD+PG+R
Sbjct: 42 GSAVGDVPGLR 52
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.2 bits (45), Expect = 2.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 145 PKGLAFHFVPMWAFLNSLSA 86
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 2.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 145 PKGLAFHFVPMWAFLNSLSA 86
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 2.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 145 PKGLAFHFVPMWAFLNSLSA 86
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 3.3
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +3
Query: 204 PNSAIRKCV 230
PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.4 bits (43), Expect = 4.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 153 SHAKGIVLEKVGVEAKQPNSAIR 221
+H K +VLE+ ++K P S R
Sbjct: 73 THEKKLVLERSKTKSKSPESRDR 95
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.0 bits (42), Expect = 5.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Frame = -3
Query: 87 PIAVHDGGSRVTRRSYSSGFTHLDS 13
P GG +T R + H+DS
Sbjct: 145 PQMYSSGGEEITPRQSHQSYHHMDS 169
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 20.6 bits (41), Expect = 7.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 423 FVESEERHVGYFYXXITNSGNVTDGVTXTTES 328
F E+R Y Y I N +T+ + T E+
Sbjct: 30 FSNFEDRVTMYVYEEIINGKKLTEIINETHEN 61
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,829
Number of Sequences: 438
Number of extensions: 2644
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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