Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060473.seq
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 111 3e-25
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 102 1e-22
At1g28470.1 68414.m03501 no apical meristem (NAM) family protein... 29 1.8
At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transfera... 28 3.1
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 3.1
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 3.1
At5g60490.1 68418.m07586 fasciclin-like arabinogalactan-protein ... 27 4.1
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p... 27 5.4
At4g10550.1 68417.m01727 subtilase family protein contains simil... 27 7.1
At1g07150.1 68414.m00761 protein kinase family protein contains ... 26 9.4
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 111 bits (266), Expect = 3e-25
Identities = 48/64 (75%), Positives = 57/64 (89%)
Frame = +3
Query: 69 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 248
R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 249 NGRK 260
NG+K
Sbjct: 76 NGKK 79
Score = 62.9 bits (146), Expect = 9e-11
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
+AGFGR GHAVGDIPGVR+ VVKV+ VSLLAL+KE
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135
Score = 43.6 bits (98), Expect = 6e-05
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
KK+ AFVP DGCLN+IEENDE
Sbjct: 78 KKIAAFVPNDGCLNYIEENDE 98
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 102 bits (244), Expect = 1e-22
Identities = 46/64 (71%), Positives = 54/64 (84%)
Frame = +3
Query: 69 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 248
R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 249 NGRK 260
NG+K
Sbjct: 76 NGKK 79
Score = 62.9 bits (146), Expect = 9e-11
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +1
Query: 322 VAGFGRXGHAVGDIPGVRYXVVKVANVSLLALYKE 426
+AGFGR GHAVGDIPGVR+ VVKV+ VSLLAL+KE
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135
Score = 43.6 bits (98), Expect = 6e-05
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 254 KKVTAFVPRDGCLNHIEENDE 316
KK+ AFVP DGCLN+IEENDE
Sbjct: 78 KKIAAFVPNDGCLNYIEENDE 98
>At1g28470.1 68414.m03501 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAM protein GI:6066594 from [Petunia hybrida]
Length = 314
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -1
Query: 338 RPNPATSIRRF----LRCGLGNRHGGRMRSLSSVLNELYTDAFADGRVGLLSF 192
+P ++ RF ++ G G HGG+ + V+ EL DG LSF
Sbjct: 248 KPKNLVNLNRFSYENIQAGFGYEHGGKSEETTQVIRELVVRE-GDGSCSFLSF 299
>At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 488
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 20 KWVNPEEYERRVTREPPS*TAMGGQRIQESPHGYEMEG*PFRWCISRKGHR-PRESW 187
KW++ ++ + + + ++ +++ E G +M G F W ++RKG + +E W
Sbjct: 280 KWLDSKKCDSVIYMAFGTMSSFKNEQLIEIAAGLDMSGHDFVWVVNRKGSQVEKEDW 336
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 84 WADKEFKKAHMGTKWKANPFGGASHAKG 167
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 84 WADKEFKKAHMGTKWKANPFGGASHAKG 167
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At5g60490.1 68418.m07586 fasciclin-like arabinogalactan-protein
(FLA12)
Length = 249
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -3
Query: 396 GYFYXXITNSGN---VTDGVTXTTESRH*YS 313
G+F +T SGN +T GVT TT S + YS
Sbjct: 138 GHFPLNVTTSGNTVNITSGVTNTTVSGNVYS 168
>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide acetyltransferase
(E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
contains Pfam profiles PF00198: 2-oxo acid
dehydrogenases acyltransferase (catalytic domain),
PF00364: Biotin-requiring enzyme, PF02817: e3 binding
domain; supporting cDNA
gi|5881964|gb|AF066080.1|AF066080
Length = 637
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 129 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK*PH 269
K P +S +K V + PNS IRK + +L+++ +K PH
Sbjct: 386 KETPSKSSSTSKPSVTQSDNNYEDFPNSQIRKIIAKRLLESKQKIPH 432
>At4g10550.1 68417.m01727 subtilase family protein contains
similarity to subtilisin-like protease AIR3 GI:4218991
from [Arabidopsis thaliana]
Length = 778
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 84 WADKEFKKAHMGTKWKANPFGGASHAKG 167
W+ + A + T WK +PFG A+G
Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603
>At1g07150.1 68414.m00761 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 499
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 65 VHVLRAVRIPRGLPIWIA 12
+H RA+ PRG P+W+A
Sbjct: 175 IHTPRALITPRGSPLWMA 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,655,378
Number of Sequences: 28952
Number of extensions: 197616
Number of successful extensions: 436
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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