Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060472.seq
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 135 2e-32
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 135 2e-32
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 6e-29
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 111 3e-25
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 9e-12
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 61 6e-10
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 45 4e-05
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 5e-04
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.73
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 0.97
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013) 29 2.2
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 29 2.2
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 3.9
SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78) 28 5.1
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 28 5.1
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 28 6.8
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 6.8
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 28 6.8
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 135 bits (327), Expect = 2e-32
Identities = 60/88 (68%), Positives = 71/88 (80%)
Frame = +2
Query: 254 AMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKXKVAYKGEDKTFFPEEV 433
AMNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PK +V +KGE K+FFPEE+
Sbjct: 60 AMNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEI 119
Query: 434 SSMVLTKMKETAEAYLGKTVQNAVIRFP 517
SSMVLTKMKETAEAYLG V +AV+ P
Sbjct: 120 SSMVLTKMKETAEAYLGAKVTDAVVTVP 147
Score = 124 bits (298), Expect = 7e-29
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = +3
Query: 78 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVR 257
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQV
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 258 *TP 266
P
Sbjct: 61 MNP 63
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 511 VPAYFNDSQRQATKDAGT 564
VPAYF+DSQRQATKDAGT
Sbjct: 146 VPAYFHDSQRQATKDAGT 163
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 135 bits (327), Expect = 2e-32
Identities = 62/88 (70%), Positives = 74/88 (84%)
Frame = +2
Query: 254 AMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKXKVAYKGEDKTFFPEEV 433
A+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPK +V YKGE KTF EE+
Sbjct: 60 ALNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEI 119
Query: 434 SSMVLTKMKETAEAYLGKTVQNAVIRFP 517
SSMVL KMKETAEAYLG+ V +AVI P
Sbjct: 120 SSMVLGKMKETAEAYLGQKVTSAVITVP 147
Score = 120 bits (289), Expect = 9e-28
Identities = 55/63 (87%), Positives = 58/63 (92%)
Frame = +3
Query: 78 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVR 257
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQV
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 258 *TP 266
P
Sbjct: 61 LNP 63
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +1
Query: 511 VPAYFNDSQRQATKDAGT 564
VPAYFNDSQRQATKDAGT
Sbjct: 146 VPAYFNDSQRQATKDAGT 163
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 124 bits (299), Expect = 6e-29
Identities = 57/64 (89%), Positives = 59/64 (92%)
Frame = +3
Query: 78 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVR 257
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQV
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 258 *TPT 269
PT
Sbjct: 61 MNPT 64
Score = 113 bits (271), Expect = 1e-25
Identities = 64/113 (56%), Positives = 72/113 (63%), Gaps = 25/113 (22%)
Frame = +2
Query: 254 AMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKXKVAYKGEDKTFFPEEV 433
AMNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK KV YKGE KTFF EEV
Sbjct: 60 AMNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEV 119
Query: 434 -------------------------SSMVLTKMKETAEAYLGKTVQNAVIRFP 517
SSMVL KMKETAEAYLG V +AV+ P
Sbjct: 120 VNEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVP 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +2
Query: 428 EVSSMVLTKMKETAEAYLGKTVQNAVIRFP 517
++SSMVL KMKETAEAYLG V +AV+ P
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVP 240
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1
Query: 511 VPAYFNDSQRQATKDAGTS 567
VPAYFNDSQRQATKDAG S
Sbjct: 171 VPAYFNDSQRQATKDAGES 189
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 511 VPAYFNDSQRQATKDAG 561
VPAYFNDSQRQATKDAG
Sbjct: 239 VPAYFNDSQRQATKDAG 255
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 111 bits (268), Expect = 3e-25
Identities = 53/86 (61%), Positives = 65/86 (75%)
Frame = +2
Query: 260 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKXKVAYKGEDKTFFPEEVSS 439
NP NT+FDAKRLIGR ++D +VQ D+K +PF+VV KP +V K E KTF EE+S+
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 440 MVLTKMKETAEAYLGKTVQNAVIRFP 517
MVLTKMKETAEAYLGK V +AV+ P
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTVP 845
Score = 95.9 bits (228), Expect = 2e-20
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Frame = +3
Query: 96 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVR*TP 266
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP 761
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1
Query: 511 VPAYFNDSQRQATKDAGTSXA*TFSNLMN 597
VPAYFND+QRQATKDAG T ++N
Sbjct: 844 VPAYFNDAQRQATKDAGAIAGLTVMRIIN 872
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 67.3 bits (157), Expect = 9e-12
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +2
Query: 260 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKXKVAYKGEDKTFFPEEVS 436
N NTI KR IGRKF D VQ ++ H P++VV +V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 437 SMVLTKMKETAEAYLGKTVQNAVIRFP 517
+M+ T++K TAE L V + VI P
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVP 204
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 96 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 251
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 496 ECSYPVPAYFNDSQRQATKDAGTSXA*TFSNLMN 597
+C VP+Y+ D QR+ DA + LMN
Sbjct: 198 DCVISVPSYYTDRQRRCMLDASATAGLNCLRLMN 231
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +3
Query: 84 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVR 257
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 258 *TP 266
P
Sbjct: 90 INP 92
Score = 56.8 bits (131), Expect = 1e-08
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGKPKXKVAYKGEDKTFFPEEV 433
+NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 434 SSMVLTKMKETAEAYLGKTVQNAVIRFP 517
V+ K++ AE L TV AV+ P
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSVP 177
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/39 (48%), Positives = 30/39 (76%)
Frame = +2
Query: 401 GEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVIRFP 517
GE ++F PE++S++VL ++K AEA+LG+ V+ AVI P
Sbjct: 8 GEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVP 46
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1
Query: 511 VPAYFNDSQRQATKDAGT 564
VPA+FND+QRQATKDAGT
Sbjct: 45 VPAHFNDAQRQATKDAGT 62
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 147 GKVEIIANDQGNRTTPSYVAFTDTERLI 230
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 156 EIIANDQGNRTTPSYVAFT-DTERL 227
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 421 PRGSQFHGAYENEGNCRSLSRQNCAECSYPVPAYFN 528
PRG Q Y G+C S+S++NC + S+ V +N
Sbjct: 1142 PRGKQI--PYGTAGDCYSVSQENCRKGSFKVTYQYN 1175
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 65 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 241
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 242 QEPGAMNPNNTIFDA 286
M+P NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013)
Length = 119
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 287 KRLIGRKFEDATVQADMKHWPFEVVSDGGKPKXKVAYKGEDKTFFPEEVSSMVLTKMKET 466
K ++G + E A + + WPF+V + K + K P + +++ +TKM+E
Sbjct: 42 KLVLGER-ERAIQELSQQQWPFDVQDPALESTSKDLKETPIKETSPVQAATLNMTKMEEN 100
Query: 467 AEAYLGKT 490
+ G T
Sbjct: 101 QQELSGNT 108
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 559 LHLLWLVFESH*STREPDNCILHSFAEIS 473
++ LWL F + S+ D C+LHS A ++
Sbjct: 415 IYTLWLDFSRYYSSASSDICVLHSIAHLA 443
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 395 YKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVIRFP 517
Y+ D TF PEE+ M+L + E + +++ V+ P
Sbjct: 73 YQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVP 113
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 24 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 110
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78)
Length = 355
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 205 RSQTPSVSSEMPPRTRCDEPQQHNIRCQTS 294
+ Q P++ P+++ + P QHN RC+++
Sbjct: 75 KKQLPTLMKWFSPKSKDETPTQHNQRCESN 104
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 205 RSQTPSVSSEMPPRTRCDEPQQHNIRCQTS 294
+ Q P++ P+++ + P QHN RC+++
Sbjct: 221 KKQLPTLMKWFSPKSKDETPTQHNQRCESN 250
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +2
Query: 374 KPKXKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVIRFPRTSMTLKDKPQK 553
+PK K + E+ EE +M ++K LGK V+ + ++TL + Q
Sbjct: 654 QPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCNITLNSQKQ- 712
Query: 554 MQVHLXLERSRI 589
M HL R +I
Sbjct: 713 MSQHLLGLRHKI 724
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 106 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 249
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 106 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 249
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
>SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 65 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 241
L++ N + ++ R GY L R C R + +R + H++L R +RC
Sbjct: 661 LRLVNTRDDKTHGKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTDTETRFCEKRCA 718
Query: 242 QEPGAMNPNNTIFDA 286
M+P N F+A
Sbjct: 719 GTASGMDPKNIPFNA 733
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/82 (28%), Positives = 35/82 (42%)
Frame = +1
Query: 49 QVTRLIKNTKWQKHPQ*ESIWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVS 228
Q R IK +K Q H Q PR + G+ +SP T++T P R S S
Sbjct: 257 QAGRKIKISKPQNHKQ-----APRPRQASPKTKGQ--ASPKTKSTKPARPRQASPKAKTS 309
Query: 229 SEMPPRTRCDEPQQHNIRCQTS 294
+ P+Q +++ +TS
Sbjct: 310 KPQDQDKQVARPRQSSLKTKTS 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,654,694
Number of Sequences: 59808
Number of extensions: 472343
Number of successful extensions: 1464
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -