Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060472.seq
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.1  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 597 VHEIRERSSXRCTCIFCG 544
           V EI+ R    C CI CG
Sbjct: 124 VMEIKIREPVECKCIKCG 141


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 597 VHEIRERSSXRCTCIFCG 544
           V EI+ R    C CI CG
Sbjct: 124 VMEIKIREPVECKCIKCG 141


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 422 PEEVSSMVLTKMKETAEAYLGKTVQNAVIRFPRTS 526
           P +   M+L  M+      +    QN+VI+F + S
Sbjct: 466 PRKRCKMILESMEIERNGLIASQRQNSVIQFAKAS 500


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 546 GLSLRVIEVRGNRITAFCTVL 484
           GL  R     GN +TAF T L
Sbjct: 154 GLLERAFRCLGNNLTAFLTTL 174


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 81 PFCIFNQSCYLFLKQ 37
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,676
Number of Sequences: 438
Number of extensions: 4220
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)