Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060471.seq
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    76   4e-15
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   3.3  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   7.7  

>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 35/67 (52%), Positives = 47/67 (70%)
 Frame = +2

Query: 257 VELSETGTSVYYQPGILIGGQVNHNCCTQRGIGYYLEVLLALGPFCKEPLNAVLQGVTHS 436
           +E+S TGTS  Y+PG +IGG+V H+C T +GIGY+LE +L L  F K P +  L GVT S
Sbjct: 63  IEISYTGTSFIYRPGNIIGGRVVHDCPTTKGIGYFLEPILILCLFAKTPTSLTLTGVTSS 122

Query: 437 DLDVSVD 457
           + D+ VD
Sbjct: 123 NEDIGVD 129



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 26/54 (48%), Positives = 40/54 (74%)
 Frame = +3

Query: 93  KYKGSNYFRQRLLLSTLSGRAIKIEDIRSTNDDPGLREYEVSLIRLLDKVTNGT 254
           ++KG  Y   RL+L+TLSG  I++E I     DPG+++Y+VS +RLL+K+TNG+
Sbjct: 8   RFKGCEYLTHRLVLATLSGTPIRVEGIYPDEADPGVKDYQVSFLRLLEKLTNGS 61


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 377 ALGPFCKEPLNAVLQGVTHSDLDV 448
           ALGP+  + +  +LQG+ +SD+D+
Sbjct: 296 ALGPYLDKIVPMLLQGMVYSDMDL 319


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 349 PSLGTTVVINLSTNQYTRLVIY*S-TGFAQLYSVPFVTLSSNRIKLTSYSRR 197
           PSL    + NLS+    RL++Y S  G +  +      +++   +L  YSRR
Sbjct: 159 PSLDVLRISNLSSKILHRLILYNSKVGDSPRFCSALFQITNRATQLRLYSRR 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,081
Number of Sequences: 5004
Number of extensions: 51242
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)