Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060471.seq
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0573 - 34815576-34815785,34816117-34816327,34816448-348166...    64   7e-11
04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378           28   6.0  
04_04_1550 - 34332948-34335986                                         28   7.9  

>03_06_0573 -
           34815576-34815785,34816117-34816327,34816448-34816623,
           34816701-34816882,34817431-34817580,34817654-34817894
          Length = 389

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 13/84 (15%)
 Frame = +2

Query: 245 ERHGVELSETG------------TSVYYQPGILIGGQ-VNHNCCTQRGIGYYLEVLLALG 385
           + H ++L+ETG            T + Y+PG+++GG+ + H+C   RGIGY+LE L+ LG
Sbjct: 59  DHHSLDLNETGKDARFLPRAYLWTKLRYKPGVIVGGRDLEHDCGVHRGIGYFLEPLILLG 118

Query: 386 PFCKEPLNAVLQGVTHSDLDVSVD 457
            F + P++  L+G+T+   D SVD
Sbjct: 119 LFARAPISIRLKGITNDTKDPSVD 142



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 27/52 (51%), Positives = 39/52 (75%)
 Frame = +3

Query: 93  KYKGSNYFRQRLLLSTLSGRAIKIEDIRSTNDDPGLREYEVSLIRLLDKVTN 248
           +  GS +FRQR++L+TL+  AI I+DIRS    PGLR +EVSL+ LL K+++
Sbjct: 8   RLSGSRHFRQRVVLATLTSTAITIDDIRSGGAAPGLRPHEVSLLHLLHKISD 59


>04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378
          Length = 419

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 224 SVTG*SDERHGVELSETGTSVYYQPGILIGGQVNHNC 334
           +V G ++E   V+ +  GT  Y  P    GG+V  NC
Sbjct: 270 TVVGSAEEHVDVQTTAVGTEGYIDPQCKKGGKVRFNC 306


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 21   HITEKLIRSISYIKMPAVIENDVIKYKGSNYFRQRLLLSTLSGR 152
            H+T  ++ ++ YI  P   ++ V  YKG  Y    +LL  L+GR
Sbjct: 892  HVTTDVVGTLGYIP-PEYGQSPVATYKGDVYSFGIVLLELLTGR 934


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,895,235
Number of Sequences: 37544
Number of extensions: 326227
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)