Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060471.seq
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.5  
SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     28   8.0  

>SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 442 RCIS--GQIRRQLYLCSLNLFLSTRLGSEIVRRGAPPLVEAKLF*C 573
           +C+S  GQI R L +  L++   T  G E++ +G P + E KL  C
Sbjct: 215 KCLSTVGQICRNLRIVHLSMCSITDKGMEMLCQGCPEIQEMKLNQC 260


>SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 18  LHITEKL--IRSISYIKMPAVIENDVIKYKGSNYFRQRLLLSTLSGRAIKIEDIRSTNDD 191
           L++T +L  ++  S+  M   +E  + K KG  +F QRL+ S      +KI   R  N+D
Sbjct: 18  LYLTLELSDVQESSHKVMERYVEFSIAKQKGREFFWQRLVDSEKRPNWLKINFDRWKNED 77


>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 253  VPFVTLSSNRIKLTSYSRRPGSSLVLRMSSILIARPLRV 137
            VPF  + S  I +T  ++R GSSL++   S+   R LRV
Sbjct: 1371 VPFDIVFSRAISITMLAKRIGSSLMIPF-SVTTCRSLRV 1408


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 6   HVRCLHITEKLIRSISYIKMPAVIENDVIKYKGSNYF 116
           H R L +TE++    SY+ +P + + D IK +  N F
Sbjct: 252 HRRILEVTERVRSCRSYMLLPHMTDADEIKNRRENEF 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,823,932
Number of Sequences: 59808
Number of extensions: 381140
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)