Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060471.seq
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58758-8|AAB93426.2|  379|Caenorhabditis elegans Hypothetical pr...    77   9e-15
Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical pr...    37   0.012
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    33   0.25 
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    33   0.25 
AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical ...    28   7.1  

>U58758-8|AAB93426.2|  379|Caenorhabditis elegans Hypothetical
           protein ZK1127.5 protein.
          Length = 379

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 35/67 (52%), Positives = 49/67 (73%)
 Frame = +2

Query: 257 VELSETGTSVYYQPGILIGGQVNHNCCTQRGIGYYLEVLLALGPFCKEPLNAVLQGVTHS 436
           VE+S TGT V ++PG++ GG VN +C T+R I Y+LE LL L PFCK P+   L+GVT++
Sbjct: 62  VEISRTGTQVIFRPGMITGGVVNLDCGTERCISYFLEPLLLLSPFCKVPMVIKLKGVTNA 121

Query: 437 DLDVSVD 457
             ++SVD
Sbjct: 122 PGEISVD 128



 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 30/61 (49%), Positives = 45/61 (73%)
 Frame = +3

Query: 75  IENDVIKYKGSNYFRQRLLLSTLSGRAIKIEDIRSTNDDPGLREYEVSLIRLLDKVTNGT 254
           + ++ +++ G N+FR RL  S LSGR I+I +IR  +D PG+R++E  LI LL+KVTNGT
Sbjct: 1   MSSETLEFSGCNFFRIRLAYSILSGRPIRIINIRKNDDRPGIRDFESKLIGLLEKVTNGT 60

Query: 255 E 257
           +
Sbjct: 61  K 61


>Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical
           protein C31A11.3 protein.
          Length = 283

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -2

Query: 194 RVIVGTANVFYFNSTPTESRKQQSLTKVIAALVFYYVIFNYCGHFNITNTPN*FFGDM*T 15
           R +     +FY N  PT S K      V + L+  Y++F YCG  N+  TP        +
Sbjct: 106 RAVASLFPIFYHNIRPTFSNKSIWFFMVSSVLLDQYILFGYCG--NVIETPKDCVNLQCS 163

Query: 14  ANMC 3
            N C
Sbjct: 164 TNQC 167


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 GVELSETGTSVYYQ-PGILIGGQVNHNCCTQRGIGYYLEVLLALGPFCKEPLNAVLQGVT 430
           G  + E G  VYY   G+L G  ++ NC +QR I Y  E+   +   CK   N      +
Sbjct: 115 GFPIVELGQCVYYSTQGVLTGKWLSENCESQR-ISYICELPTTIADSCKYNYNGYCYTFS 173

Query: 431 HSDLDVS 451
            +D   S
Sbjct: 174 TADAPFS 180


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 254 GVELSETGTSVYYQ-PGILIGGQVNHNCCTQRGIGYYLEVLLALGPFCKEPLNAVLQGVT 430
           G  + E G  VYY   G+L G  ++ NC +QR I Y  E+   +   CK   N      +
Sbjct: 115 GFPIVELGQCVYYSTQGVLTGKWLSENCESQR-ISYICELPTTIADSCKYNYNGYCYTFS 173

Query: 431 HSDLDVS 451
            +D   S
Sbjct: 174 TADAPFS 180


>AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical
           protein T05G11.2 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 212 FIFPKTRVIVGTANVFYFNSTPTESRKQQSLTKVIAALVFYYVIFNYCGHFNITNTP 42
           F+    RVI     V ++      S      + +I  L+  YV+F YCG  N+ +TP
Sbjct: 100 FLITIERVIATYFPVLFYKYRCKTSTIMIYTSILICGLINQYVLFGYCG--NVIDTP 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,659,142
Number of Sequences: 27780
Number of extensions: 288126
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)