Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060471.seq
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 537 SSSHNFRSKPRRQE*I*GAQVELPSYLSTDTSR 439
           S S  FRS  R  + +  +  ELP +++ D+S+
Sbjct: 39  SVSSGFRSSLRNYKTLISSHDELPGHINCDSSK 71


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 359 YLEVLLALGPFCKEPLNAVLQGVTHSD 439
           Y  + L +    K+ LN+V+QG  H D
Sbjct: 232 YTRMGLKIRNSTKDTLNSVVQGAIHGD 258


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 210 HIPEDPGHRWYCECLLF 160
           H+   P   WY +C+ F
Sbjct: 176 HLETHPNVTWYSQCVTF 192


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +3

Query: 183 NDDPGLREYEVSLIRLLDKVTNGTE 257
           +D PGL    + +++ + K  +GT+
Sbjct: 137 SDRPGLEHIVIGIVKTVAKKLHGTD 161


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +3

Query: 183 NDDPGLREYEVSLIRLLDKVTNGTE 257
           +D PGL    + +++ + K  +GT+
Sbjct: 137 SDRPGLEHIVIGIVKTVAKKLHGTD 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,386
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)