Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060471.seq
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22100.1 68418.m02573 RNA cyclase family protein contains Pfa...    74   1e-13
At3g11900.1 68416.m01459 amino acid transporter family protein l...    30   1.2  
At5g38190.1 68418.m04602 myosin heavy chain-related                    28   6.6  
At2g38420.1 68415.m04719 pentatricopeptide (PPR) repeat-containi...    28   6.6  

>At5g22100.1 68418.m02573 RNA cyclase family protein contains Pfam
           profiles: PF01137 RNA 3'-terminal phosphate cyclase,
           PF05189 RNA 3-prime-terminal phosphate cyclase (RTC)
          Length = 375

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
 Frame = +2

Query: 257 VELSETGTSVYYQPGILIGGQ-VNHNCCTQRGIGYYLEVLLALGPFCKEPLNAVLQGVTH 433
           V+++ETGT + Y+PG ++GG+ + H+C   R IGYYLE LL LG F K+PL+  L+G+T+
Sbjct: 61  VDINETGTRLKYKPGTIVGGKNLVHSCSLSRSIGYYLEPLLLLGLFGKKPLSIRLKGITN 120

Query: 434 SDLDVSVD 457
              D SVD
Sbjct: 121 DPRDASVD 128



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 31/52 (59%), Positives = 39/52 (75%)
 Frame = +3

Query: 93  KYKGSNYFRQRLLLSTLSGRAIKIEDIRSTNDDPGLREYEVSLIRLLDKVTN 248
           K KGS  FRQRLLLSTLS   I I++IR+    PGLR +EV+L+RLL+ VT+
Sbjct: 6   KMKGSQSFRQRLLLSTLSSTPISIDEIRADETIPGLRPHEVNLLRLLEIVTD 57


>At3g11900.1 68416.m01459 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 432

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 122 LTKVIAALVFYYVIFNYCGH 63
           L KV+A + F YV+F +CG+
Sbjct: 254 LAKVLAGITFVYVLFGFCGY 273


>At5g38190.1 68418.m04602 myosin heavy chain-related
          Length = 969

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 392 CKEPLNAVLQGVTHSDLDVSVDK*DGSSTCAP*IYSCRR 508
           CKE +  ++QGV+      S D+ D SST     + C R
Sbjct: 783 CKESVRRLVQGVSRGTSSDSDDELDSSSTSIRGYFGCPR 821


>At2g38420.1 68415.m04719 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 444

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 162 IEDIRSTNDDPGLREYEVSLIRLLDKVTNGTE 257
           +ED+R T   PGLR+Y V ++R L +   G E
Sbjct: 230 LEDLRKTRFSPGLRDYTV-VMRFLVEGGRGKE 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,645,732
Number of Sequences: 28952
Number of extensions: 265647
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)