Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060470.seq
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 109 3e-25
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 43 5e-05
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 42 8e-05
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 42 1e-04
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 40 3e-04
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 37 0.003
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 35 0.009
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 35 0.012
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 33 0.029
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 33 0.038
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 31 0.12
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 31 0.20
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 31 0.20
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 30 0.35
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 29 0.82
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 29 0.82
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 28 1.1
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 27 3.3
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 3.3
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 26 4.4
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 26 4.4
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 26 5.8
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 109 bits (263), Expect = 3e-25
Identities = 60/137 (43%), Positives = 79/137 (57%)
Frame = +1
Query: 256 LSCGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQ 435
L+CG TH+A+ PLDL+KCR QV+ Y + GFK + +EG+RGL G PT IGYS+Q
Sbjct: 32 LACGTTHSAITPLDLIKCRKQVNPNIYPGNIAGFKTILSKEGLRGLYTGGMPTLIGYSLQ 91
Query: 436 GLCKFGFYEVFKVAYAGMLDDETASLTVPSCTWRRLASAELSPDIXPVAHGRPAXVRIQT 615
G K+GFYE+FK Y+ ++ + A S ASAEL DI + VR+QT
Sbjct: 92 GCGKYGFYELFKHKYSTLVGAQKAHEYRTSIYLAASASAELLADIM-LCPMEAIKVRVQT 150
Query: 616 MPGFSSNPXGEAWPKXV 666
+N EAW K V
Sbjct: 151 SNPRFANTTREAWSKIV 167
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 42.7 bits (96), Expect = 5e-05
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +1
Query: 253 CLSCGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSM 432
C+ LT+ P+ +VK R+ Y N GF ++ EG+RG G+AP+ +G S
Sbjct: 110 CIVAALTN----PIWVVKSRILSKRVNYTNPFFGFYDLIKNEGLRGCYAGFAPSLLGVS- 164
Query: 433 QGLCKFGFYEVFKV 474
QG +F YE K+
Sbjct: 165 QGALQFMAYEKLKL 178
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 289 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 462
PL +++ RLQV +++++N + R +G+ G KG+ P + Q F YE
Sbjct: 206 PLLVIRTRLQVMRSPHRSIMNLVLQTWRLQGILGFYKGFLPHLLRVVPQTCITFLVYE 263
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 41.9 bits (94), Expect = 8e-05
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Frame = +1
Query: 259 SCGLTHTAVVPLDLVKCRLQV-------DAEK--YKNVVNGFKVSVREEGVRGLAKGWAP 411
+CG T P +++K R Q+ D K YK+V F + R EG+RGL +G
Sbjct: 34 ACGAV-TLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGLQRGLGT 92
Query: 412 TFIGYSMQGLCKFGFYE-VFKVAYAGMLDD 498
++ C+ GFYE + + LDD
Sbjct: 93 AYVYQICLNGCRLGFYEPIRRTLNTWFLDD 122
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +1
Query: 289 PLDLVKCRLQVDAEK--------YKNVVNGFKVSVREEGVRGLAKG 402
P LVK R+Q + K YK++ N F ++E GV+GL G
Sbjct: 148 PFFLVKTRMQSYSPKFPVGQQYGYKHIFNAFSRIIKENGVKGLFVG 193
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 41.5 bits (93), Expect = 1e-04
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Frame = +1
Query: 268 LTHTAVVPLDLVKCRLQVD-----AEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSM 432
+T A P+ LVK RLQ+D A +Y++ ++ ++R EG RGL KG + + +G
Sbjct: 175 ITSAATNPIWLVKTRLQLDKKSGQAAQYRSSIDCIIKTIRLEGFRGLYKGLSASLLGVG- 233
Query: 433 QGLCKFGFYEVFKVAYA 483
+ ++ YE FK A A
Sbjct: 234 ESTLQWVLYEKFKHAVA 250
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 331 KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 465
KY ++ FK+ E+G+ GL G + FG YEV
Sbjct: 311 KYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILFGSYEV 355
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 LSCGLTHTAVV-PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSM 432
L G T TA+ P D++K R+Q++ YKN ++ K+ EG RG G+ + S+
Sbjct: 218 LISGATATAITNPFDMLKTRVQLEPHIYKNFLHSAKLVYANEGFRGFLDGFFLRVLRKSI 277
Query: 433 QGLCKFGFYE 462
+ YE
Sbjct: 278 SSTITWSVYE 287
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Frame = +1
Query: 283 VVPLDLVKCRLQVDAE--------KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQG 438
V LD + RL DA+ ++ +V+ ++ + R +G+RGL +G+ P+ +G +
Sbjct: 150 VYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYR 209
Query: 439 LCKFGFYEVFK-VAYAGMLD 495
FG Y+ K V G L+
Sbjct: 210 GLYFGMYDTLKPVVLVGPLE 229
Score = 31.5 bits (68), Expect = 0.12
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Frame = +1
Query: 256 LSCGLTHTAVVPLDLVKCRLQVDAE---------KYKNVVNGFKVSVREEGVRGLAKGWA 408
+S ++ TA P++ VK +Q E +YK + FK + EEGV L +G
Sbjct: 36 VSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNT 95
Query: 409 PTFIGYSMQGLCKFGFYEVFK 471
+ Y F F + FK
Sbjct: 96 ANVLRYFPTQALNFAFKDKFK 116
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 35.1 bits (77), Expect = 0.009
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Frame = +1
Query: 259 SCGLTHTAVV-PLDLVKCRLQVDAEKY-----KN--VVNGFKVSVR----EEGVRGLAKG 402
+ GL + VV PLD+VK R Q Y KN V+ G S+R EG+ GL +G
Sbjct: 14 AAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRG 73
Query: 403 WAPTFIGYSMQGLCKFGFYEVFKVAY 480
P +GY F YE KV +
Sbjct: 74 VGPMMLGYLPSWSIYFVVYEKCKVLF 99
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 334 YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFK 471
Y N + F+ + EG+ +G P+ G G+ +F YE FK
Sbjct: 230 YNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHVGI-QFPLYEYFK 274
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +1
Query: 256 LSCGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQ 435
+S +++ PLD +K R Q + + + F+ +V+ EG++GL +G I ++
Sbjct: 26 VSSAISNVIGYPLDSIKVRQQT--YNFPTIRSCFQNAVKNEGLKGLYRGLTLPLISATLS 83
Query: 436 GLCKFGFYEVFKVAYA 483
F Y+ K+ +A
Sbjct: 84 RSVSFTVYDSLKLTFA 99
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 33.5 bits (73), Expect = 0.029
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 256 LSCGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQ 435
LS +T + PLD++K ++ + E Y+ VV +E G+ G KG S+
Sbjct: 176 LSGAITAAVLTPLDVIKTQINLRPESYRKVVRRI---YKENGIFGFEKGLGLRVFASSLG 232
Query: 436 GLCKFGFYEVFK 471
G YE K
Sbjct: 233 LSIYLGTYEHVK 244
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 33.1 bits (72), Expect = 0.038
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Frame = +1
Query: 268 LTHTAVVPLDLVKCRLQ----VDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQ 435
L H+ + P+D +K R+Q V N+VN EGV L +G + +G
Sbjct: 32 LEHSVMYPVDAIKTRMQMLNGVSRSVSGNIVNSVIKISSTEGVYSLWRGISSVIMGAGPS 91
Query: 436 GLCKFGFYEVFKVAYAGMLDDETASLTVPSC 528
F E FK D AS +C
Sbjct: 92 HAIYFSVLEFFKSKINASPDRPLASALAGAC 122
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 232 RSLRSWWCLSCGLT--HTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGW 405
R L S +C +T + P D++K R+Q+ + KYK+ ++ R EG+ +
Sbjct: 112 RPLASALAGACAITISDAFMTPFDVIKQRMQLPSRKYKSALHCATTVFRNEGLGAFYISY 171
Query: 406 APTFIGYSM 432
PT I S+
Sbjct: 172 -PTCIAMSI 179
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +1
Query: 280 AVVPLDLVKCRLQVDA----EKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCK 447
A P D+VK ++Q D YKN K + G+RG +G+ P + +
Sbjct: 229 AAYPFDIVKSKIQTDGFLSKATYKNSWQCAKGIYTKAGLRGFYRGFVPVLVRAAPANAVT 288
Query: 448 FGFYE 462
F YE
Sbjct: 289 FYVYE 293
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 30.7 bits (66), Expect = 0.20
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +1
Query: 253 CLSCGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGW-APTFIGYS 429
C+ +T V PLD+VK RLQ ++ ++ + + + L KG AP +G
Sbjct: 32 CVGSVITTLTVTPLDVVKTRLQSES------ISQYSSTQPISSAKILGKGRPAPKPLGGP 85
Query: 430 MQGLCKFGFYEVFKVAYAGMLDDETASLTVPSCTWRRLASAELSP 564
+ GL + +E + + G++ T + +P+ T + L +L P
Sbjct: 86 VSGLYQIARHEGVRSLWRGLVPSLT--MLLPANTVQFLGYEQLLP 128
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 262 CGLTHTAV-----VPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGW 405
CG+T V PL+++K R Q+ + +V+N R EG++G +G+
Sbjct: 89 CGMTAEVVSSFVWTPLEVIKARTQISQKG--SVINTISTLARSEGLKGFYRGY 139
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Frame = +1
Query: 277 TAVVPLDLVKCRLQV-------------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTF 417
T PLD+VK R QV AEK ++ K+ + GV+G +G
Sbjct: 189 TISTPLDIVKTRYQVATSSAMRKAEYGLQAEKELGILEIAKLLFSKHGVKGFTRGLFTRM 248
Query: 418 IGYSMQGLCKFGFYEVFK 471
G+ +E FK
Sbjct: 249 CYIMPSGMISMSVFESFK 266
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 29.9 bits (64), Expect = 0.35
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 289 PLDLVKCRLQVDAEK--YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 462
PLD+VK R+Q+ K Y + K V+ EG L +G P + + + KF +
Sbjct: 28 PLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASND 87
Query: 463 VF 468
+
Sbjct: 88 TY 89
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 28.7 bits (61), Expect = 0.82
Identities = 23/89 (25%), Positives = 34/89 (38%)
Frame = -1
Query: 605 RTLAGLPWATGXMSGDNSADAXRRQVHEGTVSEAVSSSSIPA*ATLNTS*XPNLQRPCIE 426
R+ LPWA G N QVH T++ A I +++ L
Sbjct: 284 RSFFALPWAAGSHVYINIPSLSYWQVHPFTLASAPFDDFIELFVAVHSGFTERLANRLYS 343
Query: 425 YPMKVGAHPLARPRTPSSRTDTLKPFTTF 339
P + LA P TP S ++T + +F
Sbjct: 344 MPHEYPNFSLA-PGTPESLSNTYRELNSF 371
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 0.82
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 286 VPLDLVKCRLQVDAEKYK 339
+P+DLV RL++DA++YK
Sbjct: 137 LPVDLVPIRLEIDADRYK 154
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -1
Query: 440 RPCIEYPMKVGA---HPLARPRTPSSRTDTLKPFTT 342
RP E P+ G HPL RP PSS + P++T
Sbjct: 154 RPLPETPVSPGGSLVHPLPRPPLPSSVSSHSSPYST 189
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 370 REEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 462
+ EG+ GL +G+ P S Q F FYE
Sbjct: 293 KSEGLLGLFRGFGPRIFWTSSQSSLMFVFYE 323
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 349 NGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGF 456
+ F++ + V G + W P + G+CK GF
Sbjct: 1105 SNFQIPMHVRSVHGWSCQWGPREDSMLLSGICKHGF 1140
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 4.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 532 WRRLASAELSPDIXPVAHG 588
W++LA+ E+SP P+ G
Sbjct: 532 WKKLAAKEISPPFKPIVEG 550
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 289 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKG 402
P+D V LQ YK+ + F R G++GL +G
Sbjct: 212 PVDTVVKTLQTFPSNYKSFKDCFLSIYRNSGIKGLYRG 249
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 277 TAVVPLDLVKCRLQVD-----AEKYKNVVNGFKVSVREEGVRGLAKGWAPTFI 420
T P D+++ R QV+ YKN+ + + EG+ G +G++ +
Sbjct: 242 TLTFPADVLRRRFQVNRIPGIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNML 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,020
Number of Sequences: 5004
Number of extensions: 47854
Number of successful extensions: 180
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -