Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060470.seq
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.001
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.001
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = +1

Query: 256 LSCGLTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAP 411
           ++  ++ T V P++ VK  LQV        + ++YK +++ F    +E+G     +G   
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 412 TFIGYSMQGLCKFGFYEVFKVAYAGMLDDETASL 513
             I Y       F F + +K  + G +D  T  L
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = +1

Query: 256 LSCGLTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAP 411
           ++  ++ T V P++ VK  LQV        + ++YK +++ F    +E+G     +G   
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 412 TFIGYSMQGLCKFGFYEVFKVAYAGMLDDETASL 513
             I Y       F F + +K  + G +D  T  L
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 270 DPHGRGAPRPGEVSPP 317
           DPH   A +P  +SPP
Sbjct: 185 DPHDETAKKPRVLSPP 200


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 111 GPRNGEFRAASSNEEN 64
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,644
Number of Sequences: 438
Number of extensions: 4045
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)