Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060468.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 50 4e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 47 3e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 47 3e-06
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 45 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 42 6e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 1e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 41 1e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 41 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 3e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 39 8e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 38 0.001
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 38 0.002
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.005
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 36 0.007
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.007
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 35 0.013
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.022
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.029
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.089
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.21
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 30 0.27
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 29 0.48
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 28 1.1
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.5
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.9
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 27 2.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 4.4
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 5.9
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 25 7.8
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 25 7.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 7.8
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 49.6 bits (113), Expect = 4e-07
Identities = 27/94 (28%), Positives = 49/94 (52%)
Frame = +1
Query: 151 IYTIQNELRKTSATNRWHGLVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESR 330
I +N+LR A + + + S+ + ++ +F +CGE+ I + DR+T+
Sbjct: 15 IRRFKNDLRALDAVKQSNCVYVGNLSFYTTEE-QIYALFSKCGEIRRIIMGVDRFTKTPC 73
Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
GF FV +FE +DA ++L + LD R +R +
Sbjct: 74 GFCFVEYFENQDALDSLKYISRTSLDERIIRADL 107
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F G V I + RD TR S G+A+V F D E+ALD ++ ++ GR R+
Sbjct: 96 LFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI 153
Score = 33.1 bits (72), Expect = 0.039
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
RL+ F G + I D + S+GF FV + +A +A+ M+ RML G+ L V
Sbjct: 379 RLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 430 M 432
+
Sbjct: 438 L 438
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESR----GFAFVRFFERRDAEEALDTMDGRMLDGREL 420
+R +FE G V + IP R R +R G AFV F + D ++A++T++G+ LD RE+
Sbjct: 60 IRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119
Query: 421 RVQ 429
VQ
Sbjct: 120 VVQ 122
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 319 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
R RGF FV F D A++ M+G+ + L V+
Sbjct: 255 RRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/48 (39%), Positives = 32/48 (66%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
LR +F R G + +Y+ +D+ T ++GFAFV +++R A +A D +DG
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L+++F + G V + I R+ T+ SRGF F+ F +A A+D ++ + GR L VQ
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQ 175
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 42.3 bits (95), Expect = 6e-05
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +1
Query: 217 SR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
SR SY ++ + R F R G + I + R++ T +S G+AFV F RD + A G
Sbjct: 105 SRLSYDTKES-DIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAG 163
Query: 397 RMLDGRELRVQM 432
ML+GR + V +
Sbjct: 164 LMLNGRRIVVDV 175
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
VF GE DI + RD+ T +S+GFAF+++ ++R A+D M L R +RV
Sbjct: 50 VFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRV 104
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L R F CG + + I RD T +GFA+++F + ++AL + +M +GR LR+
Sbjct: 286 LWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRI 343
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 262 VFERC---GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+FE C G V +I+IPRDR GF F F +D E A ++ L G+ +RV
Sbjct: 27 LFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/84 (30%), Positives = 44/84 (52%)
Frame = +1
Query: 175 RKTSATNRWHGLVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 354
R SA +H L S + D ++ +FE G++ +++ RD R S+GF ++++
Sbjct: 331 RAASAEIPFHRLCVSNIHFNLTDE-DVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYR 388
Query: 355 ERRDAEEALDTMDGRMLDGRELRV 426
A AL+ M+G L GR +RV
Sbjct: 389 NPISARNALEKMNGFDLAGRNMRV 412
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
FE+ G V D I RD+ + S+G A+V F D+ +A + G+ L G + VQ+
Sbjct: 260 FEQAGPVRDAQIVRDKISGRSKGVAYVEFC-HEDSVQAAIALSGKRLLGLPVIVQL 314
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F + G+V +I IP R GFAFV +R+ AEEA+++++G +DGR + V
Sbjct: 128 FSKFGKVREIKIPTKGGGRMC-GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Score = 33.5 bits (73), Expect = 0.029
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L F G + + + T E+RG+ FV F DA+ A + + L GR LR+
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRL 78
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 38.7 bits (86), Expect = 8e-04
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 289 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQ 429
DI IPR TR SR FAFV + + RDAE+A + GR L+ G LRV+
Sbjct: 37 DIPIPR---TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVE 82
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT---MDGRMLD 408
LR FE+ GEV D + RD T SRGF F+ F + E + +DG+++D
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIID 233
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ F CG V + I D++T +GFA++ F E AL ++G ML R L+V
Sbjct: 71 LQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LLNGSMLHERPLKV 127
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 298 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
I D T SRG+ FVRF + D + AL M G++ R +RV
Sbjct: 218 IMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 277 GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
G++ + +P+ ++ R +RGFAF F R+A A+ + L GR L +Q
Sbjct: 745 GQLRSVRVPK-KFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQ 794
Score = 33.9 bits (74), Expect = 0.022
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 325 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
S GF FV F ++ A A+ M+G +LDG +L +++
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKL 699
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 268 ERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
E+CG V ++ + Y +E G VRF +AE + M GR DGR
Sbjct: 281 EKCGRVTNVVL----YDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L F CG++ I +P D + +GF +V F + A++ ++ M+G + GR R+
Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRL 438
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L + FE G + + D + S+G+ +V F A+ A+ + +DGR + + +
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDL 338
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.7 bits (76), Expect = 0.013
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F R G++ + RD+ T +S +AF+ F + E+A M ++D + V
Sbjct: 260 LELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 328 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
RG AF F+ +A+ + T++G ++GR LRV+
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.5 bits (73), Expect = 0.029
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
D T SR + FVRF ++ + AL M G + GR LR+ +
Sbjct: 217 DPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISV 258
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 31.9 bits (69), Expect = 0.089
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRF 351
F+R G+V + IP D+ + +G+AFV F
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
++R F + G V + + R+R T S+ +AF+ F A +TM +L G+ L+ +
Sbjct: 120 QMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQCK 179
Query: 430 M 432
+
Sbjct: 180 V 180
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 325 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
S+GF F F DAE A+ +DG+ G +L Q
Sbjct: 350 SKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQ 384
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 274 CGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG-RELRVQM 432
C V Y P R S+G A + F DA A + +GR++DG R+++V++
Sbjct: 82 CKRVSLAYGPNGR----SKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD 408
+F G V ++++ DR T +G+A + + A++A+D + +LD
Sbjct: 29 LFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLD 77
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFA--FVRFFERRDAEEALDTMDGRMLDGRELR 423
F + G++ I I + + G ++ + + DA A+ +DG + DGR LR
Sbjct: 142 FGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLR 196
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 227 DYLLLTRPCHRFVAEVFRNSF*IV*IFSSNQTNLII 120
D++ +T P H FV + RNS + + S+N +N+I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 349 FFERRDAEEALDTMDGRMLDGRELRV 426
F++ RDA ALD +DGR++ L+V
Sbjct: 336 FYDTRDASFALDELDGRIIHNCCLQV 361
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 316 CTDLWECRYHQLLRTFRKRGVVFRR 242
C +W+C+ Q + F +RG+V R+
Sbjct: 232 CDGIWDCKSSQQVVEFVRRGIVARQ 256
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 325 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
S+G+ FV F + A A DT++G M+ + + V
Sbjct: 424 SKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFV 457
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 200 GMVSLKVDNLTYRTTPEDYAAFSKGAEKLVISTFPEIGTQG 322
G+ +L VDN+++R + E +AF+ + EIG G
Sbjct: 259 GLATLTVDNISHRHSLESDSAFTLSSVSQDSLEIHEIGNSG 299
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L +F G V DI + T + RG A V FF+ A A+ + + G+E+++Q
Sbjct: 24 LYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQ 79
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 316 CTDLWECRYHQLLRTFRKRGVV 251
C +W+C+ Q + F +RG+V
Sbjct: 229 CDGIWDCKTSQQVIEFVRRGIV 250
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -2
Query: 448 GDHIAPSEREVPCRPTFVRPSCPGLLQHHDARKTLRRRILYFPLCTDLWE 299
GD I ER C P F RPS + T++ + DLWE
Sbjct: 350 GDCIVGRERFKICEPIFHRPSNETVSLPEAIYITIKNYAANYKRRNDLWE 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,193
Number of Sequences: 5004
Number of extensions: 45593
Number of successful extensions: 161
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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