BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060468.seq (686 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15 SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07 SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 52 4e-07 SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06 SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 49 4e-06 SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 47 1e-05 SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 46 3e-05 SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 45 5e-05 SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05 SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 44 1e-04 SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04 SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 44 2e-04 SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04 SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 41 8e-04 SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04 SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 40 0.001 SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001 SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 40 0.001 SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002 SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002 SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 40 0.002 SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 40 0.002 SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 40 0.002 SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004 SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004 SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006 SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 38 0.008 SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 38 0.010 SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.013 SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023 SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 36 0.023 SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.031 SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031 SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031 SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031 SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041 SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054 SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 35 0.071 SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 35 0.071 SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094 SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12 SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29 SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 33 0.29 SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 32 0.38 SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 32 0.50 SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50 SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.50 SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 31 0.66 SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87 SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 31 1.2 SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 31 1.2 SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 31 1.2 SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 30 1.5 SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 30 1.5 SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0 SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) 29 2.7 SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 4.7 SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 29 4.7 SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 6.2 SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1 >SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 204 Score = 79.4 bits (187), Expect = 3e-15 Identities = 34/51 (66%), Positives = 44/51 (86%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 405 L++VF++ G++GDIYIPRDR T ESRGFAFVRF+E+RDAE+A+D MD L Sbjct: 32 LKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDATCL 82 Score = 54.8 bits (126), Expect = 6e-08 Identities = 36/91 (39%), Positives = 38/91 (41%) Frame = +2 Query: 179 RPPPRIDGMVSLKVDNLTYRTTPEDYAAFSKGAEKLVISTFPEIGTQGKVEDSPS*GFSS 358 R PP IDGM SLKVDNLTYRTT ED K L P + F Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66 Query: 359 VVMLKKPWTRWTDECWTAGNFAFRWRDMVAP 451 + C A F FRWRDMV P Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97 >SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 215 Score = 53.2 bits (122), Expect = 2e-07 Identities = 24/57 (42%), Positives = 39/57 (68%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423 L +VFER G+V + I RD+ TRESRG AF+ F +R+ A+ A+ ++ + + GR ++ Sbjct: 26 LHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAVNKKQMFGRTIK 82 >SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) Length = 1313 Score = 52.0 bits (119), Expect = 4e-07 Identities = 23/59 (38%), Positives = 36/59 (61%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429 ++ +F G V + +P DR SRGFA+V + + + E+AL MDG +DG+E+ VQ Sbjct: 1173 VQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQ 1231 >SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 364 Score = 49.2 bits (112), Expect = 3e-06 Identities = 20/49 (40%), Positives = 34/49 (69%) Frame = +1 Query: 280 EVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 +V D+ + DR T+ RGFAFV F +++ E+A++ +DG+ DGR ++V Sbjct: 254 DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKV 302 Score = 40.3 bits (90), Expect = 0.001 Identities = 18/40 (45%), Positives = 24/40 (60%) Frame = +1 Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 DR T RGF FV F + ++A+D DG LDGR ++V Sbjct: 43 DRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKV 82 >SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) Length = 304 Score = 48.8 bits (111), Expect = 4e-06 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429 L+ +F G + I++ +D++T +S+GFAF+ F R DA A++ + G D L V+ Sbjct: 197 LQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVE 255 >SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) Length = 159 Score = 47.2 bits (107), Expect = 1e-05 Identities = 23/58 (39%), Positives = 33/58 (56%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 L F C +V D+ + DR T RGF FV F + + E+A+D DG+ DGR ++V Sbjct: 21 LEEKFHGC-DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKV 77 >SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) Length = 97 Score = 46.0 bits (104), Expect = 3e-05 Identities = 18/49 (36%), Positives = 32/49 (65%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGR 399 +R FE+ G + D+++ +D+ T+E+RG +V+F + A A + MDGR Sbjct: 39 IRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDGR 87 >SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) Length = 298 Score = 45.2 bits (102), Expect = 5e-05 Identities = 23/60 (38%), Positives = 31/60 (51%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 L F G++ D+ IP D T + RGF FV F D A+D M+ L GR +RV + Sbjct: 21 LHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNL 80 >SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 204 Score = 45.2 bits (102), Expect = 5e-05 Identities = 23/60 (38%), Positives = 37/60 (61%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 + R FE G + D+++ R+ GFAF F +RRDAE+A+ +DGR + G+ RV++ Sbjct: 18 IEREFETFGPLRDVWVARN-----PPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVEL 72 >SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) Length = 252 Score = 44.0 bits (99), Expect = 1e-04 Identities = 20/45 (44%), Positives = 28/45 (62%) Frame = +1 Query: 292 IYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 + I DR T RGF FV F + + E+A+D DG+ LDGR ++V Sbjct: 125 VNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKV 169 >SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 514 Score = 44.0 bits (99), Expect = 1e-04 Identities = 21/58 (36%), Positives = 34/58 (58%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 ++ VFE G V + + D T S+G+ FV+F E A+ A++ M+G L GR L++ Sbjct: 258 VKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315 Score = 36.3 bits (80), Expect = 0.023 Identities = 18/60 (30%), Positives = 32/60 (53%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 L F + G+V D+ I DR +R S+G A++ F ++ A+ + G+ L G + V + Sbjct: 162 LEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAIG-LSGQKLLGAPIMVML 220 >SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) Length = 201 Score = 43.6 bits (98), Expect = 2e-04 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = +1 Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420 D+ L R FE+ G + +++ R+ GFAFV + + RDAEEA+ +DG + R + Sbjct: 16 DSSELERAFEKFGRLSKVWVARN-----PPGFAFVEYEDYRDAEEAVRELDGANVCDRTI 70 Query: 421 RVQ 429 RV+ Sbjct: 71 RVE 73 >SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 389 Score = 41.5 bits (93), Expect = 6e-04 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 ++++F G V + RDR T +S G+AFV + DA +A+ M+G L + L+V Sbjct: 43 IKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKV 100 Score = 34.3 bits (75), Expect = 0.094 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 5/100 (5%) Frame = +1 Query: 142 ELNIYTIQNELRKTSATNRWHGLVKSR*SY---LPNDA*R--LRRVFERCGEVGDIYIPR 306 E+N +QN+ K S +K+ Y LP D + +F+ G++ + + Sbjct: 87 EMNGARLQNKTLKVSFARPSSTEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLK 146 Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 D + E RG FVRF +R +A+ A+D ++ + L G +++ Sbjct: 147 D-VSGEGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKL 185 >SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 382 Score = 41.1 bits (92), Expect = 8e-04 Identities = 18/55 (32%), Positives = 34/55 (61%) Frame = +1 Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 +F + G V ++++P+DR T+ +G+ FV F DA+ A+ M+ + G+ +RV Sbjct: 32 LFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRV 86 Score = 33.1 bits (72), Expect = 0.22 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +1 Query: 298 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 I RD T S+GFAF+ F ++ A++ M+G+ L R + V Sbjct: 132 IMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITV 174 >SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 184 Score = 41.1 bits (92), Expect = 8e-04 Identities = 18/38 (47%), Positives = 27/38 (71%) Frame = +1 Query: 319 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 R GFAF F +RRDAE+A+ +DGR + G+ +RV++ Sbjct: 65 RNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVEL 102 >SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) Length = 407 Score = 40.3 bits (90), Expect = 0.001 Identities = 22/58 (37%), Positives = 31/58 (53%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 LR +F CG V + + RDR T +GF +V FE +DA M+ GR++RV Sbjct: 72 LRELFTTCGNVESVRLIRDRKTGIGKGFGYV-LFESKDAVVFALKMNNAEFKGRKIRV 128 >SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 435 Score = 40.3 bits (90), Expect = 0.001 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT---MDGRMLDGR 414 ++ F R GE+ + D TR SRGF FVRF + DA+ L T + GR+ + R Sbjct: 131 MKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVR 187 >SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) Length = 171 Score = 40.3 bits (90), Expect = 0.001 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423 +++ FE+ G V I + R + + S+G+AFV F A+ A DTM M+ GR L+ Sbjct: 114 IKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGRLLK 170 >SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 732 Score = 39.5 bits (88), Expect = 0.002 Identities = 22/58 (37%), Positives = 32/58 (55%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 L FE C I+ DR + ESRGF FV + + A++ L M G +DGR++R+ Sbjct: 305 LGAAFEGCSNAKVIF---DRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRL 359 >SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 781 Score = 39.5 bits (88), Expect = 0.002 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 393 LR FE G++ + I RD TRE++G+ +V+F + A AL+ D Sbjct: 69 LRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALENCD 115 >SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) Length = 209 Score = 39.5 bits (88), Expect = 0.002 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 L +F R G + + RD+ T ES +AF+ F + D E A MD ++D R + V Sbjct: 136 LEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRRIHV 193 >SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) Length = 507 Score = 39.5 bits (88), Expect = 0.002 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRG--FAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 L +F + G + D+ D R G FAFV F + RDAE+A+ DG DG +RV Sbjct: 277 LHDIFYKYGHIADV----DLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRV 332 Query: 427 Q 429 + Sbjct: 333 E 333 >SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) Length = 842 Score = 39.5 bits (88), Expect = 0.002 Identities = 19/56 (33%), Positives = 35/56 (62%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420 LR+ FE+ GE+ + + RD T+ SRGF F+ F + + + L++ + LDG+++ Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNS-GAQELDGKKM 178 >SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 299 Score = 38.7 bits (86), Expect = 0.004 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL-DTMD--GRMLDGRELR 423 LR FE GE+ D+ + D T++SRGF +V F + + L D ++ +DG+E+ Sbjct: 30 LREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVE 89 Query: 424 VQ 429 V+ Sbjct: 90 VK 91 >SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1208 Score = 38.7 bits (86), Expect = 0.004 Identities = 17/50 (34%), Positives = 31/50 (62%) Frame = +1 Query: 277 GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 GE+ ++ + RD+ T + +GF F+ + ++R A+D +G L GR +RV Sbjct: 3 GEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRV 52 >SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 381 Score = 38.3 bits (85), Expect = 0.006 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = +1 Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM-DGRMLDGRELRV 426 + E+CGE+ + + D T ++GFAF F E+ A +A+ T+ D + GR L + Sbjct: 172 LLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAITTLNDKDIRPGRRLAI 227 >SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) Length = 291 Score = 37.9 bits (84), Expect = 0.008 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 LR+ F + GE+ + + +DR T++S+G+ FV DA E M++GR+ V + Sbjct: 26 LRKFFAQFGEIREAVVIKDRVTKKSKGYGFVT-MATSDAAELACKNKRPMIEGRQANVNL 84 >SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) Length = 392 Score = 37.5 bits (83), Expect = 0.010 Identities = 18/59 (30%), Positives = 32/59 (54%) Frame = +1 Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 +L+ +F G V + DR T + +G+ F + ++ A A+ ++G L+GR LRV Sbjct: 40 QLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRV 98 >SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 593 Score = 37.1 bits (82), Expect = 0.013 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 +R F G + I + D + +GFAFV + A+ AL+ M+G +L GR ++V Sbjct: 118 IRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175 >SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 610 Score = 36.3 bits (80), Expect = 0.023 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = +1 Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML-DGRELRV 426 VFE CG + D + D + ++GFAF F + +A+ A+ +D + + G+ L V Sbjct: 171 VFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNKEIRPGKRLGV 226 Score = 31.1 bits (67), Expect = 0.87 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +1 Query: 319 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 ++ + +AFV F ER A +A++ DG+ +DG ++ + Sbjct: 359 KKLKDYAFVHFTERDHALKAIEETDGKEMDGLKIEASL 396 >SB_13046| Best HMM Match : La (HMM E-Value=5e-23) Length = 442 Score = 36.3 bits (80), Expect = 0.023 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 381 L++VF G+V + +PR ++ E +GFAF+ F ++ AE + Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVV 146 >SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 718 Score = 35.9 bits (79), Expect = 0.031 Identities = 22/66 (33%), Positives = 33/66 (50%) Frame = +1 Query: 235 PNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414 P D RLR F G + + +D S+GF FV F +A +A+ M+GR+L + Sbjct: 222 PIDDERLREEFSPYGTISSAKVMKDD-KGNSKGFGFVCFSSPEEATKAVTEMNGRILISK 280 Query: 415 ELRVQM 432 L V + Sbjct: 281 PLYVAL 286 Score = 35.5 bits (78), Expect = 0.041 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +1 Query: 268 ERCGEVGDIYIPRDRYTRE--SRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420 E C E G I + E S+GF FV F +AEEA++ ++G+ + GR L Sbjct: 127 EICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179 >SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 371 Score = 35.9 bits (79), Expect = 0.031 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Frame = +1 Query: 253 LRRVFERCG-EVGDIYI---PRDRYTRE----SRGFAFVRFFERRDAEEALDTMDGRMLD 408 L+ VFE V D+ I PR+ + ++ SRGF FV F DA+ A+ +++G+ + Sbjct: 66 LKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQ 125 Query: 409 GRELRV 426 GR L++ Sbjct: 126 GRTLKI 131 >SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1309 Score = 35.9 bits (79), Expect = 0.031 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = +1 Query: 289 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423 ++ + +D +S+GF FV F R DA +A+ MD + G++++ Sbjct: 541 EVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVK 585 >SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 721 Score = 35.9 bits (79), Expect = 0.031 Identities = 15/58 (25%), Positives = 34/58 (58%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 + +F GE+ ++++ DR T +G+A V + ++A+ AL+ ++G + G+ + V Sbjct: 309 IHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISV 366 >SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 828 Score = 35.5 bits (78), Expect = 0.041 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = +1 Query: 226 SYLPNDA*--RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGR 399 +Y+P D R +FE + + I R + + S GF FV + DA++A+D ++G Sbjct: 52 NYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGF 111 Query: 400 MLDGRELRV 426 + + L+V Sbjct: 112 TIGNKVLKV 120 Score = 35.5 bits (78), Expect = 0.041 Identities = 16/54 (29%), Positives = 30/54 (55%) Frame = +1 Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423 +F +CG V + I D ++ +GF FV + +A+ A+ T++G M + L+ Sbjct: 294 LFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNGFMYTNKPLQ 347 >SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 618 Score = 35.1 bits (77), Expect = 0.054 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = +1 Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420 D ++ +F++ GEV +++I +++ GF F+R R AE A +D GR L Sbjct: 64 DEEEMKEMFKKYGEVAEVFINKEK------GFGFIRLDTRLHAEAAKAGLDMATRKGRTL 117 Query: 421 RVQ 429 RV+ Sbjct: 118 RVR 120 >SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) Length = 76 Score = 34.7 bits (76), Expect = 0.071 Identities = 20/67 (29%), Positives = 36/67 (53%) Frame = +1 Query: 232 LPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411 LP +L+ VF + G++ + R+ R + FV F +R A +A+D ++G +DG Sbjct: 11 LPMSETQLKAVFTKYGQIEKV--------RKIRDYGFVYFAKRESAVQAIDGINGAYIDG 62 Query: 412 RELRVQM 432 +L V + Sbjct: 63 CKLEVSL 69 >SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) Length = 929 Score = 34.7 bits (76), Expect = 0.071 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = +1 Query: 328 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429 RG+ FV F + RDAE+A+ ++GR L G + V+ Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVE 755 >SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 871 Score = 34.3 bits (75), Expect = 0.094 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 ++ +F + G V + + SRGFAFV + +AE+ +GR ++G +RV Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279 >SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 347 Score = 33.9 bits (74), Expect = 0.12 Identities = 18/61 (29%), Positives = 31/61 (50%) Frame = +1 Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429 RL + F+ G V + D+ T S+ F FV + A+ A+ M+G + + L+VQ Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQ 336 Query: 430 M 432 + Sbjct: 337 L 337 >SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 252 Score = 32.7 bits (71), Expect = 0.29 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +1 Query: 328 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 RG+AF+ + RD A DG+ +DGR + V + Sbjct: 47 RGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDV 81 >SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) Length = 328 Score = 32.7 bits (71), Expect = 0.29 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 384 L+ F + GE+ + I D T RGFAFV+F + +A +A+D Sbjct: 45 LKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEA-DAID 87 >SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) Length = 1118 Score = 32.3 bits (70), Expect = 0.38 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +1 Query: 274 CGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 C +VGD+ R+ G + F +RD + AL +DG L+G+ +R+ Sbjct: 117 CRQVGDVTYGDAHKQRQGEGV--IEFSCKRDLKRALKKLDGEELNGKRIRL 165 >SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) Length = 362 Score = 31.9 bits (69), Expect = 0.50 Identities = 17/60 (28%), Positives = 30/60 (50%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 L + F+ G V + D+ T S+ F FV + A+ A+ M+G + + L+VQ+ Sbjct: 293 LMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 352 >SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 628 Score = 31.9 bits (69), Expect = 0.50 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +1 Query: 277 GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429 G + ++ IP D+ T + R F FV F A + +DG L R + V+ Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAINVK 531 >SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 1026 Score = 31.9 bits (69), Expect = 0.50 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD----GRMLDGREL 420 + +F++ G++ + D T+ S+G AFV++ + L D G LDG L Sbjct: 432 ITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAATDEDSEGLFLDGNRL 491 Query: 421 RVQM 432 +V + Sbjct: 492 QVDL 495 >SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) Length = 462 Score = 31.5 bits (68), Expect = 0.66 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +1 Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429 +L+ F+ G V I D ++S+G V+F +A A++ + G+ML R LRV+ Sbjct: 200 KLKDTFKCAGHVIRAEIMEDD-EKKSKGMGTVQFETPMEAMNAVNLLHGKMLMDRALRVR 258 Query: 430 M 432 M Sbjct: 259 M 259 >SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 291 Score = 31.1 bits (67), Expect = 0.87 Identities = 19/65 (29%), Positives = 31/65 (47%) Frame = +1 Query: 238 NDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 417 +D + + FE G V + I RD+ + SRGF FV A++ M+ + GR Sbjct: 20 SDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRN 78 Query: 418 LRVQM 432 + V + Sbjct: 79 ITVAL 83 >SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) Length = 343 Score = 30.7 bits (66), Expect = 1.2 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 381 F GE+ +YIP + T+E +G V F +A E + Sbjct: 141 FSSSGEIASVYIPENLKTKERKGHCIVTFASVTEAFEVV 179 >SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) Length = 260 Score = 30.7 bits (66), Expect = 1.2 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +1 Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 GF FV F +A +A + ++G ++DGR++ V + Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSL 158 >SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) Length = 44 Score = 30.7 bits (66), Expect = 1.2 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = +1 Query: 277 GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396 GE+ ++ + RD+ T + +GF F+ + ++R A+D +G Sbjct: 3 GEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42 >SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) Length = 168 Score = 30.3 bits (65), Expect = 1.5 Identities = 13/44 (29%), Positives = 27/44 (61%) Frame = +1 Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 393 VFE G + ++ + D + ++RG+AFV + + DA+ + T++ Sbjct: 93 VFETAGPIYEVRLMMD-FNGQNRGYAFVVYTSKDDAKRCVKTLN 135 >SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) Length = 258 Score = 30.3 bits (65), Expect = 1.5 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 325 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 SRGF FV + D E+ DG +GR L+V Sbjct: 82 SRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKV 115 >SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1291 Score = 29.9 bits (64), Expect = 2.0 Identities = 17/68 (25%), Positives = 35/68 (51%) Frame = +1 Query: 226 SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 405 +YL D +++ + GE+ + +D T S+G+AF + + + A+ ++G L Sbjct: 682 NYLNED--QVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNGMQL 739 Query: 406 DGRELRVQ 429 ++L VQ Sbjct: 740 GDKKLIVQ 747 >SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) Length = 193 Score = 29.5 bits (63), Expect = 2.7 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -2 Query: 481 CDRNDSCMAMRGDHIAPSEREVP--CRPTFVRPSCP 380 C+ +D C G+ P E E P CR T + SCP Sbjct: 27 CNSDDKCSP--GERCRPQENECPLKCRKTIKKKSCP 60 >SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) Length = 1531 Score = 28.7 bits (61), Expect = 4.7 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +1 Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426 L+ FER GEV D+ I + + +AFV+F E A +A MD + ++V Sbjct: 265 LKEAFERYGEVIDVDIKKQ---PGNNPYAFVQFAELSSAIQARRKMDREYVGRNRVKV 319 >SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) Length = 325 Score = 28.7 bits (61), Expect = 4.7 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = +2 Query: 269 KGAEKLVISTFPEIGTQGKVEDSPS*GFSSVVMLKKPWTR-WTDECWTAGNFAFRWRD 439 K A +++ P I G + P+ + + K P R WT G F ++WR+ Sbjct: 4 KLAFAVLLCVIPHISGHGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWRE 61 >SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) Length = 876 Score = 28.3 bits (60), Expect = 6.2 Identities = 11/33 (33%), Positives = 23/33 (69%) Frame = +1 Query: 334 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432 F FV+F + A+EA+ GR+++G+++ V++ Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRI 114 >SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 949 Score = 27.9 bits (59), Expect = 8.1 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = +1 Query: 289 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGR----MLDGR 414 DI + +D+ T SRGF FV +A + L+ + M+DGR Sbjct: 438 DIRLIKDKVTGTSRGFCFVELATIEEATQLLELIAAMNPPFMIDGR 483 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,348,119 Number of Sequences: 59808 Number of extensions: 355201 Number of successful extensions: 868 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 824 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 867 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1781448916 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -