Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060468.seq
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 99 3e-21
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 99 3e-21
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 52 3e-07
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 52 3e-07
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 52 3e-07
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 52 3e-07
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 52 3e-07
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 49 3e-06
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 47 1e-05
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 47 1e-05
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 47 1e-05
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 47 1e-05
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 45 4e-05
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 45 4e-05
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 45 4e-05
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 45 4e-05
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 45 4e-05
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 45 4e-05
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 45 4e-05
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 45 6e-05
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 43 2e-04
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 43 2e-04
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 43 2e-04
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 43 2e-04
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 42 4e-04
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 42 4e-04
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 42 4e-04
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 42 5e-04
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 42 5e-04
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 40 0.001
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 40 0.001
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 40 0.001
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 40 0.002
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 40 0.002
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 40 0.002
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 40 0.002
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 40 0.002
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 40 0.002
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 40 0.002
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 40 0.002
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 40 0.002
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 39 0.003
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 39 0.003
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 39 0.003
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 39 0.004
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 39 0.004
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 39 0.004
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 39 0.004
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 39 0.004
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 38 0.007
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 38 0.007
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 38 0.009
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 38 0.009
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 38 0.009
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 36 0.021
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 35 0.047
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 35 0.047
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 35 0.063
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 35 0.063
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 35 0.063
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 34 0.083
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 34 0.083
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 34 0.083
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 34 0.083
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 34 0.083
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 34 0.11
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 32 0.44
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 31 0.77
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 30 1.3
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 30 1.3
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z49130-4|CAA88969.1| 280|Caenorhabditis elegans Hypothetical pr... 28 7.2
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 28 7.2
Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical pr... 27 9.5
AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear recep... 27 9.5
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 99.1 bits (236), Expect = 3e-21
Identities = 43/66 (65%), Positives = 56/66 (84%)
Frame = +1
Query: 235 PNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
PND LRR FER G++GD++IPRD+Y+R+S+GF FVRF+ERRDAE ALD DG+++DGR
Sbjct: 32 PND---LRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGR 88
Query: 415 ELRVQM 432
ELRV +
Sbjct: 89 ELRVTL 94
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 179 RPPPRIDGMVSLKVDNLTYRTTPED 253
R P I+G+ SLK+DNL+Y+TTP D
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPND 34
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 99.1 bits (236), Expect = 3e-21
Identities = 43/66 (65%), Positives = 56/66 (84%)
Frame = +1
Query: 235 PNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
PND LRR FER G++GD++IPRD+Y+R+S+GF FVRF+ERRDAE ALD DG+++DGR
Sbjct: 32 PND---LRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGR 88
Query: 415 ELRVQM 432
ELRV +
Sbjct: 89 ELRVTL 94
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 179 RPPPRIDGMVSLKVDNLTYRTTPED 253
R P I+G+ SLK+DNL+Y+TTP D
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPND 34
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 178 KTSATNRWHGLVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 357
K T +H V S + N +LR F+ G+V D + RD T +S+G+ FV + +
Sbjct: 15 KIDTTRHFHVFVGDLSSEVDNQ--KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 72
Query: 358 RRDAEEALDTMDGRMLDGRELR 423
R +AE A++ M+G+ L R +R
Sbjct: 73 REEAERAIEQMNGQWLGRRTIR 94
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 178 KTSATNRWHGLVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 357
K T +H V S + N +LR F+ G+V D + RD T +S+G+ FV + +
Sbjct: 25 KIDTTRHFHVFVGDLSSEVDNQ--KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 82
Query: 358 RRDAEEALDTMDGRMLDGRELR 423
R +AE A++ M+G+ L R +R
Sbjct: 83 REEAERAIEQMNGQWLGRRTIR 104
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 178 KTSATNRWHGLVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 357
K T +H V S + N +LR F+ G+V D + RD T +S+G+ FV + +
Sbjct: 128 KIDTTRHFHVFVGDLSSEVDNQ--KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 185
Query: 358 RRDAEEALDTMDGRMLDGRELR 423
R +AE A++ M+G+ L R +R
Sbjct: 186 REEAERAIEQMNGQWLGRRTIR 207
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 280 EVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
++G + + + + +AFV F + A +AL TM+ R+L RE++V
Sbjct: 68 QIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKV 116
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +1
Query: 178 KTSATNRWHGLVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 357
K T +H V S + N +LR F+ G+V D + RD T +S+G+ FV + +
Sbjct: 96 KIDTTRHFHVFVGDLSSEVDNQ--KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 153
Query: 358 RRDAEEALDTMDGRMLDGRELR 423
R +AE A++ M+G+ L R +R
Sbjct: 154 REEAERAIEQMNGQWLGRRTIR 175
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D+ +LR F + GEV + I RD T + +G+ FV + R DAE A+D M+G L R +
Sbjct: 144 DSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTI 203
Query: 421 R 423
R
Sbjct: 204 R 204
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
+RR F+R G + ++ T + +G+AFV+F + A A+ M+ + G+ +R
Sbjct: 271 IRRAFDRFGPINEVR------TFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVR 321
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/60 (38%), Positives = 34/60 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L F G++ ++ I DR T RGFAF+ F E A+ A++ M+G +GR LRV +
Sbjct: 21 LGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNL 80
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/60 (41%), Positives = 33/60 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L F + G V ++ I DR T RGFAFV F E A+ A+D +G +GR LRV +
Sbjct: 20 LGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNL 79
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F G V I + RD +R S G+A+V F + DAE ALDTM+ ++ GR +R+
Sbjct: 77 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/64 (23%), Positives = 35/64 (54%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D +L +F + GE+ + D + +GF FV F ++ A +A++ ++ +L+G +
Sbjct: 250 DQEKLSAMFSKFGEITSAVVMTDAQGKP-KGFGFVAFADQDAAGQAVEKLNDSILEGTDC 308
Query: 421 RVQM 432
++ +
Sbjct: 309 KLSV 312
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
LR F G + + D R S+GF FV F + +A A+ M+ +M+ + L V +
Sbjct: 359 LRDHFSSFGTITSAKVMVDENGR-SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F G V I + RD +R S G+A+V F + DAE ALDTM+ ++ GR +R+
Sbjct: 77 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/64 (23%), Positives = 35/64 (54%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D +L +F + GE+ + D + +GF FV F ++ A +A++ ++ +L+G +
Sbjct: 250 DQEKLSAMFSKFGEITSAVVMTDAQGKP-KGFGFVAFADQDAAGQAVEKLNDSILEGTDC 308
Query: 421 RVQM 432
++ +
Sbjct: 309 KLSV 312
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
LR F G + + D R S+GF FV F + +A A+ M+ +M+ + L V +
Sbjct: 359 LRDHFSSFGTITSAKVMVDENGR-SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F G V ++ I DR T RGFAFV F E A+ A++ ++G +GR LRV
Sbjct: 26 FAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRV 79
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F G V I + RD TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 52 FSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L++ FE G + + D R S+GF FV F + +A A+ M+ +M+ + L V
Sbjct: 333 LKKQFESYGNITSAKVMTDENGR-SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L +VF + G + + +S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 229 LEKVFAKFGNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F G V I + RD TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 52 FSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L++ FE G + + D R S+GF FV F + +A A+ M+ +M+ + L V
Sbjct: 273 LKKQFESYGNITSAKVMTDENGR-SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 329
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 322 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 190 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 226
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F G V I + RD TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 52 FSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L++ FE G + + D R S+GF FV F + +A A+ M+ +M+ + L V
Sbjct: 333 LKKQFESYGNITSAKVMTDENGR-SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 322 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 256 RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 432
RR+FE+ G V I RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 256 RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 432
RR+FE+ G V I RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 256 RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 432
RR+FE+ G V I RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 462 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 256 RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 432
RR+FE+ G V I RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 256 RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 432
RR+FE+ G V I RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 256 RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 432
RR+FE+ G V I RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 256 RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 432
RR+FE+ G V I RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
L+ F + GEV + + RD T++S+G+ FV F +++AE A+ M+G+ + R +R
Sbjct: 151 LKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVR 207
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/57 (26%), Positives = 34/57 (59%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
LR +F G++ ++ I + ++ +AFVR+ ++ A +A+ M+G+ + G ++R
Sbjct: 253 LRDLFSTYGDIAEVRIFK------TQRYAFVRYEKKECATKAIMEMNGKEMAGNQVR 303
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +1
Query: 232 LPNDA*--RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 405
LP+DA L +F+R G + +++ R GFAFV + + RDAE+A+ +DG +
Sbjct: 10 LPSDATSQELEEIFDRFGRIRKVWV-----ARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 406 DGRELRVQM 432
G RV++
Sbjct: 65 CGVRARVEL 73
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +1
Query: 232 LPNDA*--RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 405
LP+DA L +F+R G + +++ R GFAFV + + RDAE+A+ +DG +
Sbjct: 10 LPSDATSQELEEIFDRFGRIRKVWV-----ARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 406 DGRELRVQM 432
G RV++
Sbjct: 65 CGVRARVEL 73
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +1
Query: 232 LPNDA*--RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 405
LP+DA L +F+R G + +++ R GFAFV + + RDAE+A+ +DG +
Sbjct: 10 LPSDATSQELEEIFDRFGRIRKVWV-----ARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 406 DGRELRVQM 432
G RV++
Sbjct: 65 CGVRARVEL 73
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRE-SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L +F G + ++ +P DR+ RG+ +V + DAE+++ MDG +DG + V+
Sbjct: 149 LEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVE 208
Query: 430 M 432
M
Sbjct: 209 M 209
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
+F R G+V + + DR+ + GF FV ++ R DAE AL + +D R +R
Sbjct: 56 LFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIR 109
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F CG V + I DR++ +GFA+V F E+ + AL M +L GR+++V
Sbjct: 98 FHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKV 150
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
VF + GEV +I + RD+ T +S+GFAF+ + ++R A+D +G L R +RV
Sbjct: 57 VFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRV 111
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 232 LPNDA*R--LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 405
LPN+ L+ +F G++ + Y+ +GFAF+R R AE A + +DGR++
Sbjct: 123 LPNEVKETELKELFSPHGDIAECYL-------SGKGFAFLRLDTRAHAESAKEAIDGRII 175
Query: 406 DGRELRVQ 429
GR++RV+
Sbjct: 176 HGRQVRVR 183
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 232 LPNDA*R--LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 405
LPN+ L+ +F G++ + Y+ +GFAF+R R AE A + +DGR++
Sbjct: 123 LPNEVKETELKELFSPHGDIAECYL-------SGKGFAFLRLDTRAHAESAKEAIDGRII 175
Query: 406 DGRELRVQ 429
GR++RV+
Sbjct: 176 HGRQVRVR 183
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD-GRELRVQM 432
+FE+ G++ D+ + D + SRG+AFV + + DA A T DG + G+ L+V +
Sbjct: 219 LFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNV 276
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 268 ERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
E+ E+ Y DR ++ + +AF+ F ER D +A++ +G+ L+G
Sbjct: 391 EKLNELFKEYASLDR-VKKVKDYAFIHFNERDDCLKAMEEWNGKELEG 437
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F R G++ + I RDR + +S +AF+ F + E+A MD ++D R + V
Sbjct: 257 LEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F R G++ + I RDR + +S +AF+ F + E+A MD ++D R + V
Sbjct: 257 LEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F R G++ + I RDR + +S +AF+ F + E+A MD ++D R + V
Sbjct: 188 LEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 245
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ +FE+ G V D+ I + R S+GF FV +DAE A + G M++GR++ V
Sbjct: 169 LKTMFEKFGVVSDVEIIFNE--RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ +FE+ G V D+ I + R S+GF FV +DAE A + G M++GR++ V
Sbjct: 169 LKTMFEKFGVVSDVEIIFNE--RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR VF GE+ + DR + SRGF F+ F DA A D + LDG ++RV
Sbjct: 92 LRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRV 149
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
LR F R GEV + + RD T+ +RGF F+ F + ++ L+ + LDG+++
Sbjct: 61 LRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNRE-HELDGKKI 115
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F+ CG++ IP+D++T++ + FA++ F + E AL M+G + R + V
Sbjct: 75 FKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGSLFRSRPIVV 127
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
LR F R GEV + + RD T+ +RGF F+ F + ++ L+ + LDG+++
Sbjct: 61 LRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNRE-HELDGKKI 115
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 226 SYLPNDA*R--LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGR 399
+YLP + +R +F GE+ + RD+ T +S G+ FV + DA A+ + +G
Sbjct: 47 NYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGL 106
Query: 400 MLDGRELRV 426
L + ++V
Sbjct: 107 RLQNKTIKV 115
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
L +F G++ I D T S+G FVRF ++ +A+ A+ T++G + G
Sbjct: 144 LESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = +1
Query: 280 EVGDIY--IPRDRYT--RESRG--FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
EV DI+ R +Y + RG FAFV F + RDAE+A+ DG DGR +RV+
Sbjct: 24 EVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = +1
Query: 280 EVGDIY--IPRDRYT--RESRG--FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
EV DI+ R +Y + RG FAFV F + RDAE+A+ DG DGR +RV+
Sbjct: 24 EVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L FE+ G++ + + DR T++SRG+ FV +R AE A ++DGR+ V +
Sbjct: 51 LHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD-PNPIIDGRKANVNL 109
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 408
+R + + GE+ DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
F CG+V + IP+D++T + FAFV F + + AL + G M R++ V +
Sbjct: 66 FAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLAL-VLSGTMFRNRKIMVTL 120
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 408
+R + + GE+ DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 408
+R + + GE+ DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 408
+R + + GE+ DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 408
+R + + GE+ DI + RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
LR +F + G V I+I RD+ T +GFAFV F R DA A+ ++ + L+V+
Sbjct: 192 LRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVE 250
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F+ CG + IP+D++T++ + FA++ F + E AL M+G + R + V
Sbjct: 81 FKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGSLFRSRPIVV 133
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L F G+V I IP D + + RGF FV F DA A+D M+ L G+ +RV
Sbjct: 27 LMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRV 84
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 378
LR FE+ G+V DI P D+ T+ R FAF+ F E A++A
Sbjct: 126 LRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
F + GEV + DR SRGFAFV F + AL + + + G+ + V+
Sbjct: 49 FTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE-QTIKGKSVEVK 102
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 378
LR FE+ G+V DI P D+ T+ R FAF+ F E A++A
Sbjct: 126 LRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
F + GEV + DR SRGFAFV F + AL + + + G+ + V+
Sbjct: 49 FTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE-QTIKGKSVEVK 102
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LRR F+ G + I + D T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 118 LRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
L+ VFE GE+ + R R RGF ++ F EA+ M+ L G+ LR
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LRR F+ G + I + D T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 118 LRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ VFE GE+ + R R RGF ++ F EA+ M+ L G+ LRV
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LRR F+ G + I + D T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 118 LRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ VFE GE+ + R R RGF ++ F EA+ M+ L G+ LRV
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRV 280
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRES--RGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
+LR+ FE+ G++ D + +YT+E RGFAFV F + A AL + + ++L
Sbjct: 18 QLRKFFEKYGQISDASL---KYTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKLT 74
Query: 424 VQ 429
V+
Sbjct: 75 VE 76
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ +F++ GEV ++ + D+ T +GFA V F A A +DG + GR + +
Sbjct: 295 LQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHI 352
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 325 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
S GF FV+F+ DA+ AL M G +LDG L +++
Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKI 723
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 271 RCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+ G V + +P+DR T +GF FV F DA+ A+ ++ L G+ ++V
Sbjct: 35 QAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKV 86
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 298 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
I RD + S+GFAF+ F ++ AL+ M+G+ L R + V
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITV 174
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 271 RCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+ G V + +P+DR T +GF FV F DA+ A+ ++ L G+ ++V
Sbjct: 45 QAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKV 96
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 298 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
I RD + S+GFAF+ F ++ AL+ M+G+ L R + V
Sbjct: 142 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITV 184
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
GFAFV F + RDAE+A +DG+ ++G +R+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
GFAFV F + RDAE+A +DG+ ++G +R+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
GFAFV F + RDAE+A +DG+ ++G +R+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+LRR FE G++ + + D + RG+AF+ + ++ + A DG +DG+ L V
Sbjct: 119 KLRREFEAYGKIKKLTMVHDE-AGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVV 176
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 35.1 bits (77), Expect = 0.047
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+R +FE G + I + D RE+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 143 IRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 201
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 35.1 bits (77), Expect = 0.047
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+R +FE G + I + D RE+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 288 IRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 346
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 34.7 bits (76), Expect = 0.063
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM-DGRMLDGRELRVQ 429
LR +FE+ G++ + I +D+YT +G AF+ + R A T+ D + L G +Q
Sbjct: 45 LRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMNRAMQ 104
Query: 430 M 432
+
Sbjct: 105 V 105
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L ++F G + + DR T +S+ F FV + ++ A+ M+G + + L+VQ+
Sbjct: 445 LIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 34.7 bits (76), Expect = 0.063
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F G++ +I++ DR T +G+A V + +++A EA+D + L G+ ++V
Sbjct: 75 FSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKV 128
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 34.7 bits (76), Expect = 0.063
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM-DGRMLDGRELRVQ 429
LR +FE+ G++ + I +D+YT +G AF+ + R A T+ D + L G +Q
Sbjct: 45 LRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMNRAMQ 104
Query: 430 M 432
+
Sbjct: 105 V 105
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L ++F G + + DR T +S+ F FV + ++ A+ M+G + + L+VQ+
Sbjct: 445 LIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.083
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L +FE+ G V D+ I + R S+GF FV DA+ A +G ++GR + V +
Sbjct: 116 LTAMFEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 173
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.083
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L +FE+ G V D+ I + R S+GF FV DA+ A +G ++GR + V +
Sbjct: 116 LTAMFEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 173
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 34.3 bits (75), Expect = 0.083
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 384
+L F + G V D + RD T+ SRGF FV F AE A++
Sbjct: 64 QLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 108
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 34.3 bits (75), Expect = 0.083
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 384
+L F + G V D + RD T+ SRGF FV F AE A++
Sbjct: 84 QLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 128
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 34.3 bits (75), Expect = 0.083
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 384
+L F + G V D + RD T+ SRGF FV F AE A++
Sbjct: 85 QLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L + F + + R+ T +S+G+ FV F + D A+ MDG+ + R ++++
Sbjct: 219 LAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLR 277
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGREL 420
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGREL 420
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGREL 420
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+FE+ G V D+ I + R S+GF FV DA+ A +G ++GR + V +
Sbjct: 1 MFEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 55
>Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical
protein F58B3.7 protein.
Length = 371
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGF-AFVRFFERRDAEEALDTMDGRMLDGREL 420
++ E+CG+V ++ + D E R FV F A +A M+GR GR +
Sbjct: 300 IKEEMEKCGQVVNVIVHVDESQEEDRQVRVFVEFTNNAQAIKAFVMMNGRFFGGRSV 356
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 277 GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
G V + I RD+ T + +GFAFV F + AL +M+ ++ R+LR+
Sbjct: 271 GPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL-SMETIKMEKRDLRI 319
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L++ FE G + + D R S+GF FV F + +A A+ M+ +M+ + L V
Sbjct: 270 LKKQFESYGNITSAKVMTDENGR-SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 326
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 322 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 187 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 223
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGREL 420
GF FV F ++RDA++A+ ++G+ L G +
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERV 65
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 369 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 289 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
DI++ DR + +GFA+V F + A+ ++G R L+V
Sbjct: 40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRES-RGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
L+ + G+ +I +P R ++ GF F++F E+ DAE+ + + + GR +
Sbjct: 111 LQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFVEKADAEKGREFFNTNKVLGRSV 167
>Z49130-4|CAA88969.1| 280|Caenorhabditis elegans Hypothetical
protein T06D8.6 protein.
Length = 280
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 293 STFPEIGTQGKVEDSPS*GFSSVVMLKKPWTRWTDE 400
ST P+ GT+ + PS MLKK W RW D+
Sbjct: 95 STIPKAGTETETWTYPSPQMFWNAMLKKGW-RWQDD 129
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 149 ISILFKMSYGRPPPRIDGMVSLKVDNL 229
I ++F ++ G PPP IDG + + +D L
Sbjct: 1238 IYMMFNVNQGGPPPVIDGYLEITLDCL 1264
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
++E G+ G + R T E+RG AFV + + DA+ A + + G + R L V
Sbjct: 35 MYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVV 89
>Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical
protein T23H4.2 protein.
Length = 373
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
D+ E+ +AF+R +RR ++AL+ M+ +D R
Sbjct: 265 DQSPVENARYAFLRSLQRRCTDKALENMEDESMDCR 300
>AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear receptor
NHR-69 protein.
Length = 373
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
D+ E+ +AF+R +RR ++AL+ M+ +D R
Sbjct: 265 DQSPVENARYAFLRSLQRRCTDKALENMEDESMDCR 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,448,663
Number of Sequences: 27780
Number of extensions: 262434
Number of successful extensions: 676
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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