Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060468.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 69 3e-12
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 69 4e-12
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 69 4e-12
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 66 2e-11
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 63 1e-10
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 62 4e-10
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 57 1e-08
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 55 5e-08
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 52 4e-07
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 51 8e-07
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 51 8e-07
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 51 8e-07
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 51 8e-07
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 51 8e-07
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 51 8e-07
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 50 1e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 50 1e-06
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 50 1e-06
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 50 2e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 50 2e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 49 3e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 48 4e-06
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 48 4e-06
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 48 4e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 48 6e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 48 6e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 8e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 47 1e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 47 1e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 46 2e-05
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 46 3e-05
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 46 3e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 45 5e-05
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 44 7e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 44 7e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 44 1e-04
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 44 1e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 43 2e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 43 2e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 42 3e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 42 3e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 42 4e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 42 5e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 41 7e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 41 7e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 41 7e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 41 9e-04
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 41 9e-04
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 41 9e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 41 9e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 41 9e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 41 9e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 41 9e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 41 9e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 41 9e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 41 9e-04
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 40 0.001
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 40 0.001
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 40 0.001
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 40 0.002
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 0.002
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 40 0.002
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 40 0.002
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 40 0.002
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 40 0.002
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.003
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 39 0.003
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 39 0.004
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 39 0.004
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 39 0.004
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.005
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.005
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 38 0.005
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 38 0.005
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 38 0.005
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 38 0.005
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 38 0.005
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 38 0.005
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 38 0.006
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 38 0.006
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 38 0.006
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 38 0.006
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.006
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.006
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 38 0.008
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.008
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.008
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 38 0.008
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.008
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 37 0.011
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 37 0.011
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 37 0.011
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 37 0.011
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 37 0.011
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 37 0.011
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 37 0.011
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 37 0.011
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 37 0.011
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 37 0.011
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.019
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 36 0.019
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 36 0.019
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 36 0.019
At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.025
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 36 0.025
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 36 0.033
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 36 0.033
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 36 0.033
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 36 0.033
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 35 0.044
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 35 0.044
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 35 0.044
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 35 0.044
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 35 0.058
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 35 0.058
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 35 0.058
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 34 0.077
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 34 0.077
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 34 0.077
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 34 0.077
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 34 0.10
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 34 0.10
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.10
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 34 0.10
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 34 0.10
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 34 0.10
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 33 0.13
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.13
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.13
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.13
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.13
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.18
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 33 0.23
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 32 0.31
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.41
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 32 0.41
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 32 0.41
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 32 0.41
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 32 0.41
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 32 0.41
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.72
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 31 0.72
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 0.72
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 31 0.72
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.95
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 30 1.3
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 30 1.3
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 30 1.3
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 30 1.3
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 30 1.3
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 30 1.3
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 30 1.3
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 30 1.3
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 30 1.7
At5g03480.1 68418.m00304 expressed protein ; expression support... 30 1.7
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 1.7
At1g63610.2 68414.m07192 expressed protein 30 1.7
At1g63610.1 68414.m07191 expressed protein 30 1.7
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 30 1.7
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 29 2.2
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 29 2.2
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 2.2
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 2.2
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.2
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 2.2
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 29 2.9
At3g45850.1 68416.m04962 kinesin motor protein-related kinesin-r... 29 2.9
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 29 3.8
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 29 3.8
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 29 3.8
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 3.8
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 5.0
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 5.0
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 5.0
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 5.0
At5g53700.1 68418.m06672 hypothetical protein 28 6.7
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 6.7
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 28 6.7
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 6.7
At2g31920.1 68415.m03899 expressed protein 27 8.8
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 8.8
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/58 (56%), Positives = 40/58 (68%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LRR FE+ G V DIY+PRD YT + RGF F++F + DA EA MDG +L GREL V
Sbjct: 53 LRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTV 110
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/56 (51%), Positives = 45/56 (80%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+F + G+V D++IPRDR T +SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 173 YGRP-PPRIDGMVSLKVDNLTYRTTPED-YAAFSK 271
+GR PP I SL V N+T+RTT +D Y F+K
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAK 38
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/56 (51%), Positives = 45/56 (80%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+F + G+V D++IPRDR T +SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 173 YGRP-PPRIDGMVSLKVDNLTYRTTPED-YAAFSK 271
+GR PP I SL V N+T+RTT +D Y F+K
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAK 38
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/58 (55%), Positives = 40/58 (68%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR+ FE+ G V DIY+PRD YT + RGF FV+F + DA +A MDG +L GREL V
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 109
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 63.3 bits (147), Expect = 1e-10
Identities = 31/58 (53%), Positives = 38/58 (65%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR FER G V D+YIPRD Y+ + RGFAFV F + DA EA +M+ R GRE+ V
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/64 (46%), Positives = 42/64 (65%)
Frame = +1
Query: 235 PNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
PND LR FER G + DIY+PR+ YT E RGF FV++ DA EA+ M+ +++ GR
Sbjct: 60 PND---LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGR 116
Query: 415 ELRV 426
E+ +
Sbjct: 117 EIAI 120
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
LR F G V D + RDRYT SRGF FV + +AE A+ MDG+ L+GR + V++
Sbjct: 19 LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/60 (40%), Positives = 40/60 (66%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+ +F G+V + + +DR+TR+SRG AFV + R DA +A +MD ++L+GR+L V +
Sbjct: 73 IHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSI 132
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/58 (46%), Positives = 34/58 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ F GEV ++ I D+ + SRGF FV F E DA A D MDG+ L GR LR+
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRI 114
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D+ RL R+F G+V D + DR T SRGF FV+ + A+ +DG+ L+GR +
Sbjct: 219 DSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAI 278
Query: 421 RVQM 432
+V +
Sbjct: 279 KVNV 282
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D+ L +FE+ G V + +R T +SRGF FV +AE+A++ + ++GR L
Sbjct: 125 DSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRL 184
Query: 421 RV 426
V
Sbjct: 185 TV 186
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 50.8 bits (116), Expect = 8e-07
Identities = 22/60 (36%), Positives = 39/60 (65%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
RL++VF G+V ++ I + TR+S G+ +V F + DA+ A++ M+G+ DGR + V+
Sbjct: 92 RLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/60 (35%), Positives = 39/60 (65%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L+R F GE+ ++ + +D + S+G+AF++F + DA A++TMD RM +GR + + +
Sbjct: 56 LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDI 115
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L++ F GEV + + DR T SRGF FV F A A+ MDG+ L+GR++RV +
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L++ F GEV + + DR T SRGF FV F A A+ MDG+ L+GR++RV +
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/58 (43%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L F G++ D+ P D+ ++ R F FV F ER DA A+D MDG L GR L V
Sbjct: 29 LHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTV 86
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR F + GEV D + DR T SRGF FV F A A+ +DGR L GR ++V
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKV 113
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/58 (48%), Positives = 34/58 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR F + GEV D I DR T SRGFAFV F +A A+ +DG+ L GR +RV
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRV 106
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+L +F R GE+ I + D+ T+ GF FV F+ R D E+A+ + G +LD R +RV
Sbjct: 49 QLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRV 107
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR F G+V D + DR T SRGF FV F + A A+ MDG+ L+GR +RV
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR F G+V D + DR T SRGF FV F + A A+ MDG+ L+GR +RV
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+R F + G+V D I DR + SRGF FV F + + +A++ M+G+ LDGR + V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+R F + G+V D I DR + SRGF FV F + + +A++ M+G+ LDGR + V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+R F + G+V D I DR + SRGF FV F + + +A++ M+G+ LDGR + V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/60 (35%), Positives = 39/60 (65%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
LR++F G++ + + RD T+ +GF F+ F DA +AL ++DG+++DGR + V++
Sbjct: 23 LRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEV 82
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR FE+ G + + + D+++ SRGF F+ F E++ +EA+ M+G LDGR + V
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITV 80
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
RL ++F G+V + + DR T SRGF FV + + EA+ +DG+ L+GR +RV
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Query: 430 M 432
+
Sbjct: 319 V 319
Score = 34.7 bits (76), Expect = 0.058
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +FE+ G V + +R T +SRGF FV +AE A++ + L+GR L V
Sbjct: 166 LAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV 223
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/75 (29%), Positives = 44/75 (58%)
Frame = +1
Query: 208 LVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 387
L SR +Y +++ +++R FE G + +++ D+ T + +G+AF+ + RD + A
Sbjct: 140 LFVSRLNYESSES-KIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198
Query: 388 MDGRMLDGRELRVQM 432
DG+ +DGR + V +
Sbjct: 199 ADGQKIDGRRVLVDV 213
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/59 (42%), Positives = 32/59 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+ R F GEV D I DR T S+GF FV F + A+D M+G+ LDGR + Q
Sbjct: 60 IERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQ 118
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L F + G+V D I DR T SRGF FV F + + ++A++ M+G+ LDGR + V
Sbjct: 24 LETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L F + G+V D I DR T SRGF FV F + + ++A++ M+G+ LDGR + V
Sbjct: 24 LETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
LR F + GEV D + DR + S+GF FVR+ D+ + + MDG+ LDG
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDG 124
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/58 (36%), Positives = 39/58 (67%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L VF + GE+ D+ + RD+ T +S+GFAF+ + ++R A+D ++G ++ GR ++V
Sbjct: 52 LLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKV 109
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L F +CG+V + I DR + S+GF FV F +A++AL +G+ L+GR + V
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFV 107
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L +F G V +Y+ D+ T SRGF FV F R DA+ A++ ++G D LRV+
Sbjct: 229 LMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVE 287
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L F CG+V + D T SRG+ FV + + + E AL+++DG L+GR +RV +
Sbjct: 193 LAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNL 252
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+R T +SRGFAFV D +D +DG GR L+V
Sbjct: 119 NRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKV 158
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L R F R G++ D I +R T SRGF F+ F +RR +E++ M GR R + V
Sbjct: 23 LERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISV 80
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRV 426
LR F + + D+ + RD++T SRGFAFV F+ DA +AL+ + L+ G+ LRV
Sbjct: 474 LRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRV 533
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM--DGRMLDGREL 420
L ++ G + + + R++ + SRGFAF+ F A +D + DG +LDGR+L
Sbjct: 314 LYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGRKL 371
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D+ +L ++FE G V + + D+ T SRGF FV + E A +G LDGR L
Sbjct: 103 DSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPL 162
Query: 421 RV 426
RV
Sbjct: 163 RV 164
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F G+V + + DR + S+GF FV + ++ + A+ ++DG LDGR++RV
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
F + G+V D+++ D +TRESRGF F+ DA + ++D +L GR + V+
Sbjct: 65 FAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
F + G+V D+++ D +TRESRGF F+ DA + ++D +L GR + V+
Sbjct: 95 FAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 149
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
++ VF G V D++IP++ T +GFAFV+F ++DA A+ +G M R + V
Sbjct: 347 IKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAV 404
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+L F G V ++ ++ + E RGFAFV+F + D A++ +G + GR + V+
Sbjct: 35 QLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVK 94
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/51 (35%), Positives = 34/51 (66%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 402
RL++VF G+V ++ I + TR+S G+ +V F + DA+ A++ M+G++
Sbjct: 73 RLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +1
Query: 238 NDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 417
N+A L+ +F GEV + I DR RG +V F R DAE+A MDG +DG+
Sbjct: 110 NEA-HLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKV 168
Query: 418 LR 423
++
Sbjct: 169 VK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +1
Query: 238 NDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 417
N+A L+ +F GEV + I DR RG +V F R DAE+A MDG +DG+
Sbjct: 110 NEA-HLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKV 168
Query: 418 LR 423
++
Sbjct: 169 VK 170
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/58 (32%), Positives = 36/58 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F G+V + + DR + S+GF FV ++ ++A+++++G LDGR++RV
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRV 322
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D+ +L ++FE G V + + D+ T SRGF FV + E A +G +GR L
Sbjct: 111 DSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPL 170
Query: 421 RV 426
RV
Sbjct: 171 RV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/58 (32%), Positives = 36/58 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F G+V + + DR + S+GF FV ++ ++A+++++G LDGR++RV
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRV 330
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D+ +L ++FE G V + + D+ T SRGF FV + E A +G +GR L
Sbjct: 111 DSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPL 170
Query: 421 RV 426
RV
Sbjct: 171 RV 172
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+L F+R G++ + I R T RGF F+ F +RR A++A+ M GR L + + V
Sbjct: 27 QLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+L F+R G++ + I R T RGF F+ F +RR A++A+ M GR L + + V
Sbjct: 27 QLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISV 85
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
LR FE+ G + + + D+ +GFAF+R+ +A +A+ M G+ LDGR + V+
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVE 151
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L +F G V ++ D+ T SRGF FV F R DA+ A++ ++G D LRV+
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
VF C D + D+ T SRGF FV F ++DA+ A++ M+G+ L R++R
Sbjct: 166 VFSSCS---DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIR 216
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ +F G V + R ++ + FV +F+RR A A+ +++GR L G+ ++V
Sbjct: 75 LQEIFTSTGPVESSKLIR----KDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKV 128
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L ++F G V D+ I D+ T SRGF FV +A+EA+ + + GR ++V
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+R T SRGF F+ F + + AL TM+G ++GR LR+ +
Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 294
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
LR F +CGEV +++P DR T SRGFA++ D EAL + G + G + V+
Sbjct: 499 LRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQ-LSGSEIGGGNIHVE 554
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
LR FE GE+ ++ I D+ ++ S+G+AF+ + A AL M+G++++G
Sbjct: 298 LRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIING 350
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 405
L F GEV + + R++ T +S G+ FV F R AEE L G ++
Sbjct: 124 LHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVM 174
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
D T S+G+ FVRF + + AL M+G R++RV
Sbjct: 237 DSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRV 276
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F + G V ++Y+P+DR T + + F+ + DA+ A+ ++ L G+ +RV
Sbjct: 41 LWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRV 98
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 298 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
I RD T SRGF F+ + ++ A+++M G+ L R++ V
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITV 186
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR+VFE G V + +PRD T +GF FV+F DA AL+ + GR ++V
Sbjct: 301 LRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKV 357
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D RLR F G+V + I RDR T +RGF F+ F + +E + MD ++DGR +
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--MDKHIIDGRTV 75
Query: 421 RVQ 429
+
Sbjct: 76 EAK 78
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D RLR F G+V + I RDR T +RGF F+ F + +E + MD ++DGR +
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--MDKHIIDGRTV 75
Query: 421 RVQ 429
+
Sbjct: 76 EAK 78
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D RLR F G+V + I RDR T +RGF F+ F + +E + MD ++DGR +
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--MDKHIIDGRTV 75
Query: 421 RVQ 429
+
Sbjct: 76 EAK 78
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D RL+ F + G++ + I RDR T +RGF F+ F + AE + MD ++DGR +
Sbjct: 27 DEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI--MDKHIIDGRTV 84
Query: 421 RVQ 429
+
Sbjct: 85 EAK 87
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
+ +F + G V D+Y+ RD Y R+SRG FV++ + A A+D ++G
Sbjct: 227 VEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 402
+R FE+ G V ++ + +D+ T + +G FV++ +DA+ A+ + ++
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
+ +F + G V D+Y+ RD Y R+SRG FV++ + A A+D ++G
Sbjct: 227 VEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 402
+R FE+ G V ++ + +D+ T + +G FV++ +DA+ A+ + ++
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/60 (28%), Positives = 37/60 (61%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
LR + E GE+ ++ + +DR + +S+G+AFV F + A++A++ + + G+ +R +
Sbjct: 132 LRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSL 191
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+L+ +F+R GEV I P + + R F FV + ER A +A+ + ++G+ L V
Sbjct: 307 QLKELFQRHGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/58 (32%), Positives = 36/58 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L++VF GEV ++ I ++ T++S+G AF+RF A+ A+ + M++G++ V
Sbjct: 230 LKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGV 287
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L R+F R G V D+ + RD +AFV F + RDA++A +DGR DG + V+
Sbjct: 27 LERLFSRYGRVRDVDMKRD--------YAFVEFGDPRDADDARHYLDGRDFDGSRITVE 77
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
F D + D+ T SRGF FV F ++DA+ A++ M+G+ + R++R
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 220
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ +F G + + R ++ + FV +F+RR A A+ T++GR + G+ ++V
Sbjct: 79 LQEIFASTGPIESCKLIR----KDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKV 132
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 256 RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL-DTMD 393
R FER GE+ D+Y+P+D +++ RG F+ F E+ + DT D
Sbjct: 108 RSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD 154
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 381
D+ L+ + G++ D + +DR T SRGF +V F DA+ AL
Sbjct: 15 DSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 372
LR F R G + D YIP+D RGF FV F E A+
Sbjct: 256 LRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVAD 295
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L R+F R G V D+ + RD +AFV F + RDA++A +DGR DG + V+
Sbjct: 27 LERLFSRYGRVRDVDMKRD--------YAFVEFSDPRDADDARYYLDGRDFDGSRITVE 77
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 289 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
D + D+ T SRGF FV F ++DA+ A+D + G+ L R++R
Sbjct: 167 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIR 211
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ VF G V + R +E + FV +F+RR A A+ +++GR L G+ ++V
Sbjct: 70 LQEVFAGTGPVESCKLIR----KEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKV 123
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
L+R F + G+V D I DR + SRGF FV F + + +A++ M+G
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 289 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
D + D+ T SRGF FV F ++DA+ A++ M+G+ + R++R
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ +F G + + R ++ + FV +F+RR A A+ T++GR + G+ ++V
Sbjct: 79 LQEIFASTGPIESCKLIR----KDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKV 132
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM-LDGRELRV 426
+LR++FE G V + +P D T + +GF F++F + ++ A ++G++ + GR ++V
Sbjct: 280 QLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+L ++ E G V + + D+Y+ SR F F DA ++ ++G ++GRE++V
Sbjct: 91 QLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVN 150
Query: 430 M 432
+
Sbjct: 151 I 151
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F G+V + R T +S GF FV F D E A+ ++ +L+G+++RV
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +1
Query: 232 LPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
LP D R R V + + G + + G+AFV F + RDAE+A+ DG DG
Sbjct: 14 LPGDI-REREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDG 72
Query: 412 RELRVQM 432
LRV++
Sbjct: 73 HRLRVEL 79
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +1
Query: 232 LPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
LP D R R V + + G + + G+AFV F + RDAE+A+ DG DG
Sbjct: 14 LPGDI-REREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDG 72
Query: 412 RELRVQM 432
LRV++
Sbjct: 73 HRLRVEL 79
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +1
Query: 232 LPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
LP D R R V + + G + + G+AFV F + RDAE+A+ DG DG
Sbjct: 14 LPGDI-REREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDG 72
Query: 412 RELRVQM 432
LRV++
Sbjct: 73 HRLRVEL 79
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L F+ G V + D+ T S+ F FV + + A+ A+D M+GR L G++L+VQ+
Sbjct: 365 LAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
+RR FE+ GE+ + + D+ T S+G+ FV F E A A M+ ++DGR
Sbjct: 38 MRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN-PVIDGR 90
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
L + F + G+V + + D+ +GFA+V F + +AE+AL ++ +++DGR
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGR 90
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
LR +F+ GEV + R T R FV FF+ RDA +AL M+G+++ G+ + +Q
Sbjct: 199 LRHIFQVYGEVKQV-----RETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQ 252
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
F+ GEV D+ +R RGF V F +A++AL+ GR L GRE+R+ +
Sbjct: 317 FKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE-FHGRPLLGREIRLDI 371
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 393
LR F CGE+ ++ +P DR T S+G A++ F E ++ L+ D
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELNGSD 467
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L +F GE+ + +DR T S+G+ FV++ + + A A+ M+G +GR L V++
Sbjct: 496 LINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRI 555
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L +F GE+ + +DR T S+G+ FV++ + + A A+ M+G +GR L V++
Sbjct: 496 LINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRI 555
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
F + G+V ++ + TR SRGFAFV +DAE + ++ +L+GR
Sbjct: 92 FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
F + G+V ++ + TR SRGFAFV +DAE + ++ +L+GR
Sbjct: 91 FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
F + GE+ D I RDR+T + RGF F+ F + ++ ++ D +++G+++ ++
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE--DTHVINGKQVEIK 91
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM--DGRMLDGRELRV 426
L+ F + G V + + RD T SRGF FV F D+EE +D + G M+D + +V
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDELLSKGNMIDMADTQV 180
Query: 427 QM 432
++
Sbjct: 181 EI 182
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
F + GE+ D I RDR+T + RGF F+ F + ++ ++ D +++G+++ ++
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE--DTHVINGKQVEIK 91
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM--DGRMLDGRELRV 426
L+ F + G V + + RD T SRGF FV F D+EE +D + G M+D + +V
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDELLSKGNMIDMADTQV 180
Query: 427 QM 432
+
Sbjct: 181 SL 182
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
+L+ F G++ D + DR + S+GF FV + DAE+A M+ + LDG
Sbjct: 49 KLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDG 102
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D +L +F+ G V + + R+ T ESRG +V A+ A+ ++DG + GRE+
Sbjct: 120 DIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREM 179
Query: 421 RVQ 429
RV+
Sbjct: 180 RVR 182
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/61 (31%), Positives = 37/61 (60%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
RLR VF R GE+ D+ + R + +SR FA++ F ++A++A+ ++ +D + V+
Sbjct: 18 RLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYRISVE 76
Query: 430 M 432
+
Sbjct: 77 V 77
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F + G V + + RD R SRGF FV F +A++A++++ G L ++L V
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMGR-SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = +1
Query: 196 RWHGLVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 375
RW L S N+ RLR +F G++ + R S+GF FV F ++++
Sbjct: 302 RWSNLYVKNLSESMNET-RLREIFGCYGQIVSAKVMCHENGR-SKGFGFVCFSNCEESKQ 359
Query: 376 ALDTMDGRMLDGRELRVQM 432
A ++G ++DG+ + V++
Sbjct: 360 AKRYLNGFLVDGKPIVVRV 378
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 322 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+S+GF FV+F + A A + G M+ G++L V
Sbjct: 149 QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD 408
VFE GE+ + + D+ T +++GF FV F R+ A+EAL R+L+
Sbjct: 123 VFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILN 171
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD 408
VFE GE+ + + D+ T +++GF FV F R+ A+EAL R+L+
Sbjct: 123 VFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILN 171
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L F+ G+V + D+ T S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 355 LAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L F+ G+V + D+ T S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 346 LAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = +1
Query: 304 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+D+ T+ +GF F+ F DA++AL ++G++++GR + V+
Sbjct: 99 KDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 232 LPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
LP D R R V + + G + + G+AFV F + RDA++A+ DG DG
Sbjct: 14 LPGDI-REREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDG 72
Query: 412 RELRVQM 432
LRV++
Sbjct: 73 HHLRVEL 79
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 232 LPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
LP D R R V + + G + + G+AFV F + RDA++A+ DG DG
Sbjct: 14 LPGDI-REREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDG 72
Query: 412 RELRVQM 432
LRV++
Sbjct: 73 HHLRVEL 79
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 402
L+ FE GE+ + + D+ T +G+ FV F R+ A EAL + RM
Sbjct: 424 LKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRM 473
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+ F G++ D + DR + SRGF FV + A A+ M + LDGR + V
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL---DTMDGRMLDGRE 417
RLR F GEV + I +DR T +RGF FV F + AE + +DG++++ ++
Sbjct: 21 RLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAKK 79
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL---DTMDGRMLDGRE 417
RLR F GEV + I +DR T +RGF FV F + AE + +DG++++ ++
Sbjct: 21 RLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAKK 79
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F+ CG V + I D++ + +GFA+V F E +EAL + L GR+L+V
Sbjct: 109 FQTCGTVNRVTILMDKFG-QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F+ CG V + I D++ + +GFA+V F E +EAL + L GR+L+V
Sbjct: 109 FQTCGTVNRVTILMDKFG-QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +1
Query: 277 GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
GEV ++ I R++ + + +G+AFV F + A EA+DT++ G+ ++
Sbjct: 116 GEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL---DTMDGRMLDGRE 417
RL+ F GEV + I +DR T +RGF FV F + AE + +DGR+++ ++
Sbjct: 21 RLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKK 79
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 384
FE+ G D+ + D T+ RGF F+ + D+EEA++
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVE 163
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL---DTMDGRMLDGRE 417
RL+ F GEV + I +DR T +RGF FV F + AE + +DGR+++ ++
Sbjct: 21 RLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKK 79
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 384
FE+ G D+ + D T+ RGF F+ + D+EEA++
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVE 163
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+ +F +CG V ++ I R + ++RGFAFV +A+ A+D D + GR + V
Sbjct: 111 ISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISV 167
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 417
+RR FE+ GE+ + I D+ T +S+G+ FV F E A A+ ++DGR+
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV-ADPNPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 417
+RR FE+ GE+ + I D+ T +S+G+ FV F E A A+ ++DGR+
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV-ADPNPVIDGRK 86
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F+ CG V + I D++ + +GFA+V F E +EAL + L GR+L+V
Sbjct: 112 FQTCGTVHRVTILTDKFG-QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 163
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR+ F +CG + + D + S+GF FV F +A +A+ T G+M G+ L V
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR F G++ + I +D R RG+AFV F DA A +T++G + L V
Sbjct: 217 LREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYV 273
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 417
L +VF G I RD + S+GF FV F DA A+D ++G+ D +E
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVDALNGKTFDDKE 293
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+LR F G + + RD + SRG FV F +A A+ M+G+M+ + L V
Sbjct: 342 KLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVA 400
Query: 430 M 432
+
Sbjct: 401 L 401
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +1
Query: 322 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+S+G+ FV++ A+ A+D ++G +L+ +++ V
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L+R+F GE+ + +D + SR F FV F + A A++ M+G ++D +EL V
Sbjct: 135 LKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHV 191
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 381
+R+VFE+ G V +I +P+D+ T E + F+++ + + A+
Sbjct: 126 IRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAI 168
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
+ VF R G + DIY+ D + RG+AFV+F + A A+ ++G
Sbjct: 223 VNEVFSRYGIIEDIYMALDDM-KICRGYAFVQFSCKEMALAAIKALNG 269
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 402
L+ FE GE+ + + D+ T ++GF FV F R+ A AL + RM
Sbjct: 179 LKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRM 228
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
L+ F V + + ++ T SRG+ FV F A A+ M+G+ L+G + V +
Sbjct: 47 LKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNV 106
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
LR V + G + ++ + R T SRG+ FV + ++ A + ++DGRE+ V
Sbjct: 80 LREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIV 137
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+LR +F G + + RD + S+G FV F +A L+ M+G+M+ G+ L V
Sbjct: 343 KLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVA 401
Query: 430 M 432
+
Sbjct: 402 L 402
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
F + GEV D I DR T RGF FV F + AE+ L+ + ++D R++
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE--EDHVIDDRKV 135
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 277 GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
G V + DR T S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 179 GSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 334 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+ FV F RDAE+A+ DG LDG LRV++
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVEL 79
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 35.1 bits (77), Expect = 0.044
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 271 RCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+CG V ++ + D TR +G AFV F + +A+ + G M R ++V+M
Sbjct: 467 KCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAV-ALSGTMFYSRPIKVRM 519
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
G+AFV F + RDA++A+ DG DG LRV++
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEI 79
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.7 bits (76), Expect = 0.058
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+F G+V + +D + ESRGFAF+ F A A+ MDGR++ + L VQ
Sbjct: 36 MFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQ 90
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 328 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVE 36
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 417
+RR F++ GE+ + I D+ T +S+G+ FV F + A A+ ++DGR+
Sbjct: 33 MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV-ADPNPVIDGRK 86
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 34.3 bits (75), Expect = 0.077
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +1
Query: 241 DA*RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
D +LR F GEV + RD+ T RGF FV F + + L + +D RE+
Sbjct: 18 DEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL--QEKHSIDTREV 75
Query: 421 RVQ 429
V+
Sbjct: 76 DVK 78
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 271 RCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
+ G V D++IPRD+ T + +GFAF + A+ A+ G
Sbjct: 29 QAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSG 70
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 328 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 36
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 34.3 bits (75), Expect = 0.077
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +1
Query: 232 LPNDA*RLRRVFERCGEVGDIYIPR---DRYTRESRGFAFVRFFERRDAEEALDTMDGRM 402
+P DA ++ E CGEVG + R DR T + +G+ F + + A A +
Sbjct: 16 IPYDATE-EQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSYE 74
Query: 403 LDGRELRV 426
++GR+LRV
Sbjct: 75 INGRQLRV 82
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
LR++F+ G + ++ R T + FV F++ RDA A D M+G+ + G+++ ++
Sbjct: 229 LRQIFQVYGPIKEL-----RETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIE 282
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
LRR FE+ G+V D + + Y S+G+ F+ F + AL ++DGR
Sbjct: 28 LRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN-SKPIIDGR 80
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L + F R + RD+ T +++G+ FV F D AL M+G+ + R ++++
Sbjct: 153 LSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLR 211
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 262 VFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+ E CG V D T++ +GF F F A+ + R +DG+EL V +
Sbjct: 222 ILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNV 278
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 381
L++ F R G V + + +++ T + RGF FVRF D +AL
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL 64
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
FER G D+ + D T RGF FV + E + + + D R
Sbjct: 140 FERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKR 189
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
D T S+G+ FVRF + + A+ M+G R++RV
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRV 287
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
FER GE+ + D T+ S+GF FV F E A A + +DGR + ++
Sbjct: 29 FERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN-PNHTIDGRTVNCKL 83
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
F + GE+ D I +DR T + RGF FV + + ++ + D ++ G+++ ++
Sbjct: 62 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI--QDNHIIIGKQVEIK 114
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 RRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM-LDGRELRVQ 429
+ F + GE+ + I RD T SRGF FV +E D + L R+ L G ++ ++
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVT-YESEDMVDHLLAKGNRIELSGTQVEIK 204
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 417
L+ F G++ + +D + S+GF FV F DA A+++++G D +E
Sbjct: 45 LKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESLNGHKFDDKE 98
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+L+ +F G V + RD S+G FV F +A EA+ + G+M++ + L V
Sbjct: 147 KLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 204
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
+R +FE+ G V DI + + R +RG F+ +A AL +++ +GR L+V
Sbjct: 110 IRSLFEKYGSVIDIEMSMHKKER-NRGLVFIEMASPEEAATALKSLESCEYEGRRLKV 166
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
LR F GEV + + R++ T RGF FV F + + L D +D R++ V+
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL--QDKHHIDNRDVDVK 78
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 298 IPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 423
+ DR T S+G+ FVRF + + A+ M+G+ R +R
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 322 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
++RGF V +++ R A++A + GR+L GR+L ++
Sbjct: 245 KNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F GE+ ++ R T ++ FF+ R A+ AL ++G + GR+L++
Sbjct: 311 LHGIFSSYGEIREV-----RRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE----RRDAEEALDTMDGR 399
LR+ FE+ GE+ + + D+ T S+G+ FV F + RR + +DGR
Sbjct: 40 LRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 328 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
+G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
L+++F CGE+ D++IP R AF+ F A++AL ++G + G
Sbjct: 43 LKKLFSPCGEITDVHIPETR-NSSLWSHAFIYFVGEGTADKALQ-LNGSDMGG 93
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +1
Query: 160 IQNELRKTSATNRWHGLVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFA 339
+ N T + + + +K+ + + N A L F G + + D R S+G+
Sbjct: 119 LSNRDPSTRLSGKGNVFIKNLDASIDNKA--LYETFSSFGTILSCKVAMDVVGR-SKGYG 175
Query: 340 FVRFFERRDAEEALDTMDGRMLDGRELRV 426
FV+F + A+ A+D ++G +L+ +++ V
Sbjct: 176 FVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
L++ F + G++ + +D+ + SR F FV F A A++ M+G
Sbjct: 241 LKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNG 287
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
+L+ +F G V + + SRGF FV + +A A+ M+G+M+ + L V
Sbjct: 343 KLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 401
Query: 430 M 432
+
Sbjct: 402 L 402
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
LR FE+ G++ + + D+ + S+G+ FV F + A++A ++DGR
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC-VDPAPVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
LR FE+ G++ + + D+ + S+G+ FV F + A++A ++DGR
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC-VDPAPVIDGR 75
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = +1
Query: 160 IQNELRKTSATNRWHGLVKSR*SYLPNDA*RLRRVFERCGEVGDIYIPRDRYTRESRGFA 339
+ N T + + + +K+ + + N A L F G + + D T S+G+
Sbjct: 123 LSNRDPSTRLSGKGNIFIKNLDASIDNKA--LFETFSSFGTILSCKVAMD-VTGRSKGYG 179
Query: 340 FVRFFERRDAEEALDTMDGRMLDGRELRV 426
FV+F + A+ A+D ++G +++ +++ V
Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 31.1 bits (67), Expect = 0.72
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Frame = +1
Query: 163 QNELRKTSATNRWHGLVKSR*S--YLPN-----DA*RLRRVFERCGEVGDIYIPRDRYTR 321
+ ELR+ R + KS+ + YL N D +L+ +F G V + +
Sbjct: 311 EEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM 370
Query: 322 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
SRGF FV + +A AL M+G+M+ + L + +
Sbjct: 371 -SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 234 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE----RRDAEEALDTMDGR 399
LRR F++ G++ + + D+ T S+G+ FV F + RR + +DGR
Sbjct: 40 LRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGR 92
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 30.7 bits (66), Expect = 0.95
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMD 393
L R+F++ G V DR +S G+AFV F + RDAE+A+ +D
Sbjct: 18 LERLFDKYGRV-------DRVDMKS-GYAFVYFEDERDAEDAIRKLD 56
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEA 378
F+R GE+ + + DR T S+G+ FV F +DAE A
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYGFVTF---KDAESA 67
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
L +F CG+V D I D ++ FAFV F + + A EAL ++ G ML +RV
Sbjct: 157 LAGLFSNCGQVVDCRICGDPHS--VLRFAFVEFADDQGAHEAL-SLGGTMLGFYPVRV 211
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
F CG+V IY+P T S G+AF+ + ++ + L T++G L GR++ V
Sbjct: 141 FSSCGKVYLIYVPIACSTGASVGYAFI---DMKNETKGL-TLNGSHLGGRKIDV 190
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE----EALDTMDGR 399
+++ FE+ GE+ + + D+ + S+G+ FV F E A +A +DGR
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE----EALDTMDGR 399
+++ FE+ GE+ + + D+ + S+G+ FV F E A +A +DGR
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE----EALDTMDGR 399
+++ FE+ GE+ + + D+ + S+G+ FV F E A +A +DGR
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
DR T ++G+ FVRF + + A+ M+G R +R+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
DR T ++G+ FVRF + + A+ M+G R +R+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 307 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 426
D T S+G+ FV+F E + A+ M+G R +R+
Sbjct: 151 DPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI 190
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
L + F+ CGE+ +Y+P D + AF+R E AE+ + G
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLR-IEGEGAEDKALQLSG 179
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
L + F CGE+ IY+PRD + + +F+ + + AE+ + G + G
Sbjct: 44 LTKHFASCGEITQIYVPRDFKKKILKSVSFM-WIKGEGAEDKALQLSGTDVGG 95
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 328 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
R +AFV F DA A++++ G L G LR++
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIE 91
>At1g63610.2 68414.m07192 expressed protein
Length = 341
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 394 RPSCPGLLQHHDARKTLRRRILYFPLCTDLWEC 296
RP CP L +H+ + + + FPL T+ W+C
Sbjct: 17 RP-CPSFLANHEPKLSTTSSSVTFPLKTNTWKC 48
>At1g63610.1 68414.m07191 expressed protein
Length = 340
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 394 RPSCPGLLQHHDARKTLRRRILYFPLCTDLWEC 296
RP CP L +H+ + + + FPL T+ W+C
Sbjct: 17 RP-CPSFLANHEPKLSTTSSSVTFPLKTNTWKC 48
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRML 405
+ F GE+ ++ + DR + +G+A + + ++ +A+ A+ M+G L
Sbjct: 111 ITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAEL 161
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 429
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 429
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 331 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 429
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGR--KGRRLRVE 70
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 319 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 408
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 100 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 319 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 408
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 126 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 265 FERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 381
F++ GE+ D D+ + +S+G+ F+ F R A AL
Sbjct: 148 FKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
++ +F G++ I DR R S+G A V F R DA A+ + LDG+ +++++
Sbjct: 124 IKELFSEVGDLKRYGIHYDRSGR-SKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKIEI 182
>At3g45850.1 68416.m04962 kinesin motor protein-related
kinesin-related protein TKRP125, Nicotiana tabacum,
PIR:T02017
Length = 1058
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 250 RLRRVFERCGEVGDIYIPRDRYTR-ESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 420
RL++ E IYIP+DRY + E+ A ER + + ++ D R++D +EL
Sbjct: 415 RLKQEVYAAREKNGIYIPKDRYIQEEAEKKAMAEKIERLELQS--ESKDKRVVDLQEL 470
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
++ +F GE+ + DR R S+G A V + R DA A+ + LDG+ +++++
Sbjct: 102 IKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
++ +F GE+ + DR R S+G A V + R DA A+ + LDG+ +++++
Sbjct: 38 IKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 432
++ +F GE+ + DR R S+G A V + R DA A+ + LDG+ +++++
Sbjct: 104 IKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEI 162
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 304 RDRYTRESRGFAFVRFFERRDAEEALDTMDG 396
RD Y R+SRG FV++ + A A+D ++G
Sbjct: 2 RDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 31
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 319 RESRGFAFVRFFERRDAEEALDTMDGR 399
R G+AF+ F + RDA +A+ +DG+
Sbjct: 35 RRPPGYAFLDFEDPRDARDAIRALDGK 61
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 381
L F++ GE+ D D+ + +S+G+ F+ + R A AL
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 381
L F++ GE+ D D+ + +S+G+ F+ + R A AL
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 381
L F++ GE+ D D+ + +S+G+ F+ + R A AL
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At5g53700.1 68418.m06672 hypothetical protein
Length = 248
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 384
L + F CG++ DI +PRD R + F+ F ++ E +D
Sbjct: 38 LAKHFASCGKIVDIDVPRDFKKRILKSPLFI-IFHAKEGESPVD 80
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 429
L + F CGE+ +++PR+ T +GF A++AL+ + G + G+EL V+
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF---------KAKKALE-LSGSKMTGKELVVK 412
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 268 ERCGEVGDIYIPRDRYT-RESRGFAFVRFFERRDAEEALDTMDGRMLDG 411
E G GDI DR T SRGFAF+ + +A A + + G L+G
Sbjct: 36 ELFGRYGDI----DRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLNG 80
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 319 RESRGFAFVRFFERRDAEEALDTMDGR 399
R G+AF+ F + RDA +A+ +DG+
Sbjct: 35 RRPPGYAFLDFEDSRDARDAIREVDGK 61
>At2g31920.1 68415.m03899 expressed protein
Length = 585
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -3
Query: 537 CGYDCASNYEAGTRPGPAPAIVTTPVWR*GATISRHLNAKFPAVQHSSVHRVQGFFSITT 358
CG A + +PG ++ ++P + IS+HLN + PA++ V + S+T
Sbjct: 209 CGTSPALRNKNVVKPGSPISMASSPKDGIKSPISKHLNCETPALRSRYVVKPASPISVTR 268
Query: 357 LEK 349
K
Sbjct: 269 SPK 271
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 253 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 414
+ V + G V +I +R + +S+G+ V F++ A + M+G + +G+
Sbjct: 218 IESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIFNGK 271
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,692,714
Number of Sequences: 28952
Number of extensions: 243150
Number of successful extensions: 829
Number of sequences better than 10.0: 193
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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